Pinned Repositories
BALSAMIC
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
adventofcode
alascca-dotfiles
dotfiles for the production environment in the ALASCCA project
lazy_reviewer
hassanfa's Repositories
hassanfa/lazy_reviewer
hassanfa/adventofcode
hassanfa/Assemblatron
De novo assembly variant validation tool
hassanfa/BALSAMIC
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
hassanfa/bioconda-recipes
Conda recipes for the bioconda channel.
hassanfa/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
hassanfa/cle-chromoseq
Repository for CLE ChromoSeq Assay
hassanfa/ctdnastuff
R package to work with ctDNA sequencing data
hassanfa/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
hassanfa/delfi_scripts
hassanfa/docker-basespace_chromoseq
hassanfa/factoextra
Extract and Visualize the Results of Multivariate Data Analyses
hassanfa/GFFtoolkit
Extracts information from GFF and prepare them in bed format
hassanfa/github_copilot
hassanfa/hassanfa
hassanfa/hassanforoughi
hassanfa/LIQUORICE
A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies
hassanfa/meetingNotes
hassanfa/miniconda_containers
Base container definition for various versions of miniconda
hassanfa/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
hassanfa/pygobject-travis-ci-examples
Testing PyGObject Applications with Travis-CI
hassanfa/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
hassanfa/scout
VCF visualization interface
hassanfa/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
hassanfa/snakemake_tutorial
hassanfa/stag-mwc
StaG Metagenomic Workflow Collaboration
hassanfa/Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
hassanfa/svenska_kurs
hassanfa/svviz2
for visual evaluation of read support for structural variation
hassanfa/Warcraft-5e-Conversion