hbucqp

hbucqp's Stars

• smikkelsendk/bwa-for-arm

  Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)

  10

• marcelm/dnaio

  Efficiently read and write sequencing data from Python

  Language:Python618

• hbucqp/ResBlaster

  find antimicrobial resistance/ virulence genes in assembled genomes

  Language:Python6

• marimo-team/marimo

  A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

  Language:Python6.6k225

• thecookingsenpai/autogpt-gui

  A graphical user interface for AutoGPT

  Language:JavaScript1.5k221

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python64.5k8k

• StaPH-B/BI_Implementation_Guide

  This document serves as a guide for State Public Health Laboratories considering hiring or working with bioinformaticians. It is currently under review with APHL and CDC.

  32

• voorloopnul/awesome-phages

  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

  445

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript837108

• ponnhide/plasmidviewer

  Python library to visualize circular plasmid maps

  Language:Python222

• baoe/AlignGraph

  Algorithm for secondary de novo genome assembly guided by closely related references

  Language:C++16623

• jaumlrc/ProphET

  Language:Perl1010

• IndEcol/country_converter

  The country converter (coco) - a Python package for converting country names between different classification schemes.

  Language:Python21471

• BU-ISCIII/taranis

  cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

  Language:Python73

• man-group/dtale

  Visualizer for pandas data structures

  Language:TypeScript4.7k400

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R58765

• BradyAJohnston/plasmapR

  Creating plasmid maps inside ggplot.

  Language:R798

• accre/SLURM

  SLURM Example Scripts

  Language:Shell6924

• nrclaudio/Genome-Analysis-2019

  Genome assembly, QC, RNA-seq, Tn-seq 📈🦠

  Language:Shell4

• janepipistrelle/bacterialGWAS

  A pipeline for performing genome-wide association tests for bacterial genomes.

  Language:R2

• janepipistrelle/bacterial_GWAS_tutorial

  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop

  1918

• bgruening/docker-galaxy-stable

  :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

  Language:Shell225133

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  815325

• OpenGene/AfterQC

  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

  Language:Python20651

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k607

• NCBI-Codeathons/asm-ngs-workshop

  ASM NGS Workshop

  Language:Perl44

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell25773

• EasyChart/Beautiful-Visualization-with-R

  《R语言数据可视化之美》配套代码

  Language:PostScript761548

• business-science/free_r_tips

  Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every week.

  Language:HTML1.3k671

• Public-Health-Bioinformatics/pubmlst_client

  List and download schemes from pubMLST.org and other BIGSDB servers

  Language:Python84