Pinned Repositories
RNAseq-R
RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/
STRchive
Short Tandem Repeat disease loci resource
elegant-scipy
1st Edition of Elegant SciPy (O'Reilly Publishers)
Bioinformatics-Conference-Bingo
Modified for bioinformatics in an Australian context
longSTR
Call STRs in long reads or assembled contigs using TRF
make-phd
Write your phd in Markdown, and automatically run the code in ipython notebooks and generate word doc, pdf and html.
python-conference-bingo
Conference Bingo for PyconAU
python_for_bioinformatics
A introductory BioPython tutorial for Bioinformatics students
TandemRepeatFinder_scripts
STRetch
Method for detecting STR expansions from short-read sequencing data
hdashnow's Repositories
hdashnow/python_for_bioinformatics
A introductory BioPython tutorial for Bioinformatics students
hdashnow/longSTR
Call STRs in long reads or assembled contigs using TRF
hdashnow/CEPH-K1463-TandemRepeats
hdashnow/STR-pipelines
Bpipe pipelines for running STR genotypers
hdashnow/STRling
Detect novel (and ref-annotated) STR expansions from short-read data
hdashnow/arq5x.github.io
hdashnow/bazam
A read extraction and realignment tool for next generation sequencing data
hdashnow/biodemo
hdashnow/bionitio
Demonstrating best practices for bioinformatics command line tools
hdashnow/bionitio-python
Demonstrating best practices for bioinformatics command line tools
hdashnow/elegant-scipy
Draft of the book Elegant SciPy for O'Reilly
hdashnow/GATK-HC-bpipe
hdashnow/hdashnow.github.io
Personal website
hdashnow/inSTRbility
hdashnow/llm-powered-applications
Orchestrating the interaction between users and Large Language Models
hdashnow/planets
hdashnow/planets-kelly
Teaching git at Software Carpentry Workshop 2019-07-01
hdashnow/pooled_simulation
hdashnow/RNAseq-R
RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/
hdashnow/slackbots-for-research
A collection of Slackbot scripts for research groups using http://Slack.com
hdashnow/slivar
genetic variant expressions, annotation, and filtering for great good.
hdashnow/STR-variation
hdashnow/STRchive_manuscript
hdashnow/STRetch-paper
Method for detecting pathogenic STR expansions from next-gen sequencing data
hdashnow/strling-denovo
Uses pedigree information to filter STRling output to find de novo variants
hdashnow/strling-MV
hdashnow/strling-wdl
WDL workflow for STRling
hdashnow/test
hdashnow/test-wdl
testing WDL features
hdashnow/writeVCF
Write a new VCF file without having to first read one