Pinned Repositories
AdvancedSingleCell
Advanced tutorials for single cell data analysis
assay-template
This is a cookiecutter template for NGS assay data. This template was made for a workshop at DTU in October 2023
bulk_RNAseq_course
Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.
course-template
A course template for Sandbox courses
hds-sandbox.github.io
Website for the Health Data Science Sandbox
NGS_summer_course_Aarhus
Repository for the NGS summer course at Aarhus university
PipeItEasy
Introductory workshop on implementation of pipelines with various languages (snakemake, nf-core, gwf)
proteomics-sandbox
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
scRNASeq_course
Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.
transcriptomics_app_ucloud
Development of the transcriptomics app based on Rstudio for UCloud
Health Data Science Sandbox's Repositories
hds-sandbox/proteomics-sandbox
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
hds-sandbox/bulk_RNAseq_course
Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.
hds-sandbox/NGS_summer_course_Aarhus
Repository for the NGS summer course at Aarhus university
hds-sandbox/hds-sandbox.github.io
Website for the Health Data Science Sandbox
hds-sandbox/scRNASeq_course
Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.
hds-sandbox/AdvancedSingleCell
Advanced tutorials for single cell data analysis
hds-sandbox/course-template
A course template for Sandbox courses
hds-sandbox/PipeItEasy
Introductory workshop on implementation of pipelines with various languages (snakemake, nf-core, gwf)
hds-sandbox/transcriptomics_app_ucloud
Development of the transcriptomics app based on Rstudio for UCloud
hds-sandbox/AlphaFold_Workshop
Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret results, predict protein structures of interest. Technical requirements provided. Enhance your knowledge of protein folding and AlphaFold2's principles. Fam
hds-sandbox/assay-template
This is a cookiecutter template for NGS assay data. This template was made for a workshop at DTU in October 2023
hds-sandbox/cookiecutter-teaching
Teaching template for the Health Data Science sandbox
hds-sandbox/GWAS_course
GWAS course material
hds-sandbox/jupyterlab_splashscreen
A splash screen for jupyterlab (mutuated from ENKI lab)
hds-sandbox/OMICS-workshop
Introductory HDS Sandbox workshop in genomics, transcriptomics and proteomics
hds-sandbox/cc-data-template
cookiecutter data template
hds-sandbox/cookiecutter-template
This is a cookiecutter template for data analysis dirs by Sandbox.
hds-sandbox/docker-cirrocumulus
containerized data visualization tool for scRNAseq including analysis with jupyterlab and scanpy
hds-sandbox/GDKworkshops
Workshops on GenomeDK cluster at Aarhus University: Introduction, pipeline creation with gwf, and more
hds-sandbox/HPC-lab
hds-sandbox/jupyterlab-quarto
Quarto JupyterLab Extension which includes personalized callouts
hds-sandbox/Popgen_course_aarhus
Population genomics course from AU BiRC - Prof Kasper Munch
hds-sandbox/PopulationGenomicsCourse
Course in population genomics at BiRC
hds-sandbox/project-template
This is a cookiecutter template for project folders by Sandbox.
hds-sandbox/RDM_NGS_course
Short course on Research Data Management for NGS data
hds-sandbox/scverse-2024-workshop
Dimensionality reduction and interactive web visualization for the scverse 2024 conference
hds-sandbox/sdv_demo
Contains demos of how to use synthetic data vault to create synthetic data