health data science unit
github repository of the biomedical genomics group in the Health Data Science Unit
Pinned Repositories
ButchR
cobra-ai
Toolbox of interpretable VAE models
compbio-conferences-2020
List of conferences and workshops interesting for the HDSU group
meet-eu-2021
onto-vae
Package to preprocess ontologies and train OntoVAE models.
OntoVAE_manuscript
This repo contains code to reproduce the analyses from the OntoVAE manuscript.
project_NB_SE
Neuroblastoma SE landscape project
RGlossar
Github repo for the data analysis course winter semester 2022/23
scCAT
Code for regulatory relationship
ShinyButchR
Shiny app to run NMF using the package Bratwurst
health data science unit's Repositories
hdsu-bioquant/onto-vae
Package to preprocess ontologies and train OntoVAE models.
hdsu-bioquant/project_NB_SE
Neuroblastoma SE landscape project
hdsu-bioquant/cobra-ai
Toolbox of interpretable VAE models
hdsu-bioquant/meet-eu-2021
hdsu-bioquant/scCAT
Code for regulatory relationship
hdsu-bioquant/ButchR
hdsu-bioquant/OntoVAE_manuscript
This repo contains code to reproduce the analyses from the OntoVAE manuscript.
hdsu-bioquant/RGlossar
Github repo for the data analysis course winter semester 2022/23
hdsu-bioquant/ShinyButchR
Shiny app to run NMF using the package Bratwurst
hdsu-bioquant/bioinfo_MoBiMA
Bioinformatics introductory course - MSc Molekulare Biotechnologie
hdsu-bioquant/dataanalysis3fs
Repo for the practicals of the data analysis course
hdsu-bioquant/hdsu-bioquant.github.io
hdsu-bioquant/HIVmicroglia
Script related to the microglia HIV paper
hdsu-bioquant/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
hdsu-bioquant/bc2_tutorial
NMF Tutorial for the BC2 Conference Basel - September 2021
hdsu-bioquant/ButcherPy
Python re-implementation of ButchR
hdsu-bioquant/chipatac2020
Workshop ChIP-seq/ATAC-seq data analysis 2020
hdsu-bioquant/COMETH-codalabv2-deNBI
Tutorial for setting up Codalab-v2 in deNBI cloud
hdsu-bioquant/covid19-comorbidity
This repository provides all the scripts to reproduce the figures of the manuscript: 'SPINT2 controls SARS-CoV-2 viral infection and is associated to disease severity'.
hdsu-bioquant/deeplife
website for DeepLife Project
hdsu-bioquant/ETBII2023
NMF Tutorial for the BC2 Conference Basel - September 2021
hdsu-bioquant/GRANet
Prediction of Gene Regulatory Networks using chromatin accessibility data
hdsu-bioquant/Irene
Integrated Ranking of Epigenetic Networks of Enhancers
hdsu-bioquant/irtg2021
hdsu-bioquant/mapmyflu
hdsu-bioquant/r4sc2024
R for single-cell course
hdsu-bioquant/ShinyCompExplore
hdsu-bioquant/sincellTE_2022
hdsu-bioquant/website
Website for HDSU
hdsu-bioquant/WEEK0_Bioinfo
Bioinformatics introductory course, WEEK 0 - MSc Molekulare Biotechnologie