Pinned Repositories
annolid
An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.
cellmapping
Registering mouse brain images to an atlas and detecting and counting cells in different regions of the brain.
checkFilePaths
createImageEvalDB
d3
A JavaScript visualization library for HTML and SVG.
mongo
The Mongo Database
mongoid
Ruby ODM framework for MongoDB
MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.
pyxnat
XNAT in Python
sam-pt
SAM-PT: Extending SAM to zero-shot video segmentation with point-based tracking.
healthonrails's Repositories
healthonrails/annolid
An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.
healthonrails/cellmapping
Registering mouse brain images to an atlas and detecting and counting cells in different regions of the brain.
healthonrails/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
healthonrails/aind-ccf-registration
healthonrails/aind-smartspim-fuse
SmartSPIM module to generate OMEZarr data from fused images
healthonrails/aind-smartspim-quantification
Takes the output of segmentation and ccf registration to calculate cell counts per brain region
healthonrails/aind-smartspim-stitch
Stitching and fusion pipeline in the cloud
healthonrails/ANTsPy
Advanced Normalization Tools in Python
healthonrails/brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
healthonrails/BrainJ
Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
healthonrails/Cutie
[arXiv 2023] Putting the Object Back Into Video Object Segmentation
healthonrails/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
healthonrails/dinov2
PyTorch code and models for the DINOv2 self-supervised learning method.
healthonrails/EdgeSAM
Official PyTorch implementation of "EdgeSAM: Prompt-In-the-Loop Distillation for On-Device Deployment of SAM"
healthonrails/EfficientSAM
EfficientSAM: Leveraged Masked Image Pretraining for Efficient Segment Anything
healthonrails/FollowAnything
healthonrails/healthonrails.github.io
healthonrails/LLaVA
Visual Instruction Tuning: Large Language-and-Vision Assistant built towards multimodal GPT-4 level capabilities.
healthonrails/MEDIAR
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
healthonrails/micro-sam
Segment Anything for Microscopy
healthonrails/nanosam
A distilled Segment Anything (SAM) model capable of running real-time with NVIDIA TensorRT
healthonrails/omnimotion
healthonrails/PoseAnything
healthonrails/segment-anything-fast
A batched offline inference oriented version of segment-anything
healthonrails/Segment-Everything-Everywhere-All-At-Once
Official implementation of the paper "Segment Everything Everywhere All at Once"
healthonrails/simba
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
healthonrails/TaskMatrix
healthonrails/tortoise-tts
A multi-voice TTS system trained with an emphasis on quality
healthonrails/TTS
🐸💬 - a deep learning toolkit for Text-to-Speech, battle-tested in research and production
healthonrails/yolov8_tracking
Real-time multi-object tracking and segmentation using YOLOv8