Pinned Repositories
aa_stat
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
alphafold
Open source code for AlphaFold.
APPLEpicker-python
MilkyWay_Frontend
heejongkim's Repositories
heejongkim/aa_stat
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
heejongkim/alphafold
Open source code for AlphaFold.
heejongkim/APPLEpicker-python
heejongkim/atomium
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
heejongkim/consensus_struct_align
Create a Consensus of Structural Alignments
heejongkim/coot-trimmings
Python customizations for the macromolecular model building software Coot.
heejongkim/cryodrgn
Neural networks for cryo-EM reconstruction
heejongkim/data_pulling_test2
heejongkim/DecoyPYrat
DecoyPYrat - Fast Hybrid Decoy Sequence Database Creation for Proteomic Mass Spectrometery Analyses
heejongkim/deepbayes-2019
Practical assignments of the Deep|Bayes summer school 2019
heejongkim/fasta_utilities
Utilities for downloading and managing protein FASTA files.
heejongkim/FATCAT-dist
heejongkim/Gource
software version control visualization
heejongkim/h5xplorer
A customizable HDF5 browser with iPython console embbeded
heejongkim/kaikonnect
Interconnect between Kaiko and TagGraph
heejongkim/learn_cryoem_math
heejongkim/mascotParser
A parser for Mascot search results ( both PMF and MSMS) in R package.
heejongkim/maxquant_linux_guide
A guide to running MaxQuant in Linux
heejongkim/nvtop
NVIDIA GPUs htop like monitoring tool
heejongkim/papers
Material from papers from KULL centre
heejongkim/pdb2sql
Fast and versatile biomolecular structure PDB file parser using SQL queries
heejongkim/prosit
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
heejongkim/pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
heejongkim/PyTorch-GAN
PyTorch implementations of Generative Adversarial Networks.
heejongkim/RawFileReader
heejongkim/rdpwrap
New offsets for RDP Wrapper Library
heejongkim/relion_scripts
Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)
heejongkim/voltageGradient
heejongkim/warp
heejongkim/XLM-Tools
A python program to score protein structures based on Crosslinks (MNXL), Monolinks (MoDS) and both (XLMO).