helenwsung's Stars
kant0063/Genome-Environment-Association-Workshop
This is a series of lessons accompanied by scripts to conduct an Genome Environmental Association Analysis and Genomic Environmental Selection Analysis
ahmccormick/Barley_EGS
Supporting data for recent submission of a manuscript on environmental genomic selection in Barley
smgogarten/GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
The-Eastern-Oyster-Genome-Project/2024_Eastern_Oyster_Population_Genomics
fgvieira/ngsLD
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
petrikemppainen/LDna
LDna: an R package to perform linkage disequilibrium network analysis
MafaldaSFerreira/wtjr_camouflage
Analyses and code used to study the evolution of winter coat color polymorphism in white-tailed jackrabbits (Lepus townsendii).
kristinmlee/dmc
Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
austinhpatton/Pupfish-Fitness-Landscapes
fulcrumgenomics/fgbio
Tools for working with genomic and high throughput sequencing data.
ucdavis-bioinformatics-training/2021-July-Genome-Wide-Association-Studies
Learn to execute a successful GWAS experiment from design to analysis.
MareesAT/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
sib-swiss/training-collection
Collection of bioinformatics training materials
alenxav/NAM
NAM breeding toolbox
atlas10280/plot_fineRADstructure
R markdown designed to build a fineRADstructure plot that includes, coancestry heatmap, dendrogram, and colorbar 'labels' for individuals (this is done manually by means of whitelist, according to your grouping metheod, e.g. geography or admixture major K by pop)
eacooper400/LDanalysis
A few simple scripts to calculate and plot LD using functions from the R genetics package
esrud/GONE
GONE: Scripts, programs and an example data set
Tom-Jenkins/admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
danjlawson/badMIXTUREexample
An example using badMIXTURE and mixPainter
DReichLab/EIG
Eigen tools by Nick Patterson and Alkes Price lab
tanyalama/OtterGenomeProject
Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)
tanyalama/Conservation-Genomics-course-DTU
Lecture and exercises for the module "Conservation Genomics" at DTU PhD course
renaschweizer/congen-unixbasics
pygmyperch/NER
Natural hybridisation reduces vulnerability to climate change
joanocha/HOTFOXES
Scripts for Rocha et al. 2023: "North-African fox genomes show signatures of repeated introgression and adaptation to life in deserts"
zhouhufeng/FAVORannotator
xihaoli/STAARpipeline
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
UW-GAC/analysis_pipeline_cwl
CWL for running analysis pipeline scripts as workflows
UW-GAC/analysis_pipeline
TOPMed analysis pipeline
stevemussmann/Comp-D_MPI
A program for comprehensive computation of D-statistics and population summaries using MPI