Pinned Repositories
ACS_polyp_study
Aging-and-CR-rat-atlas
Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging” (on reviewing)
Aging-NK
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
barpot_volcano
微生信生物
bisque
An R toolkit for estimation of cell composition from bulk expression data
immune.overdrive
main.code.for.immune.overdrive
scRNA_Aging_TME
SFM.subtype.CRC
data and code to perform SFM-subtype abalysis
helianthuszhu's Repositories
helianthuszhu/scRNA_Aging_TME
helianthuszhu/ACS_polyp_study
helianthuszhu/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
helianthuszhu/barpot_volcano
微生信生物
helianthuszhu/CTpathway
CTpathway: a CrossTalk-based pathway enrichment analysis method.
helianthuszhu/ggVolcano
The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient color volcano plot(`gradual_volcano`) and GO term volcano plot(`term_volcano`).
helianthuszhu/jfsloane
Academic Website of Jenny Sloane
helianthuszhu/Melanoma_Brain_Metastasis
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
helianthuszhu/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
helianthuszhu/mNODE-predict-metabolite-from-microbiome
helianthuszhu/multi-omics-covid
helianthuszhu/PISCES
R package for Protein activity analysis of single-cell RNAseq.
helianthuszhu/PredictIO
helianthuszhu/presto
Fast Wilcoxon and auROC
helianthuszhu/ProjecTILs
Interpretation of T cell states using reference single-cell atlases
helianthuszhu/psupertime
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
helianthuszhu/RCC-spatial-mapping
Code relating to http://dx.doi.org/10.2139/ssrn.4132721
helianthuszhu/RenalTumor
Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
helianthuszhu/sanbomics_scripts
scripts and notebooks from sanbomics
helianthuszhu/SCALEX
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
helianthuszhu/scarches
Reference mapping for single-cell genomics
helianthuszhu/scATOMIC
Pan-Cancer Single Cell Classifier
helianthuszhu/scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
helianthuszhu/scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
helianthuszhu/scDML
Batch alignment of single-cell transcriptomics data using deep metric learning
helianthuszhu/scib
Benchmarking analysis of data integration tools
helianthuszhu/SCP-single-cell-pipeline-visualization
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
helianthuszhu/scvi-tutorials
Notebooks used in scvi-tools tutorials
helianthuszhu/siamcat
R package for Statistical Inference of Associations between Microbial Communities And host phenoType
helianthuszhu/The-gut-microbiome-and-longevity-project-GMLP