hempelc
Bioinformatics Contractor and Consultant | Metagenomics | Metatranscriptomics | Metabarcoding | Molecular Ecology
University of GuelphGuelph, ON Canada
Pinned Repositories
apscale
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
apscale_wrapper
A wrapper for the metabarcoding pipeline APSCALE to automatize the generation of apscale projects, quality control graphs, post-processing, and taxonomic annotation.
european_lakes_diversity
Contains scripts for biodiversity assessments of European lakes
exstream-metagenomics-totalrnaseq-ml
Scripts for data-processing and machine learning-based analysis of metagenomics and total RNA-Seq data from the ExStream project
hempelc
jab_detector_NN_pose_estimation
A project for a hackathon to detect boxing jabs in videos.
metagenomics-vs-totalRNASeq
Compares metagenomics and total RNA-Seq data-processing pieplines for microbial identification. Includes scripts to run pipelines on HPC clusters or locally, as well as scripts for statistical analysis.
metagenomics-vs-totalRNASeq-reference-comparison
A repo for my second PhD chapter
mitogenome_assembly_evaluation
Comparing and evaluating mitogenome assemblers
MyScripts
Contains all scripts I'm commonly using. Some scripts are under development. Mainly used for backups.
hempelc's Repositories
hempelc/jab_detector_NN_pose_estimation
A project for a hackathon to detect boxing jabs in videos.
hempelc/metagenomics-vs-totalRNASeq
Compares metagenomics and total RNA-Seq data-processing pieplines for microbial identification. Includes scripts to run pipelines on HPC clusters or locally, as well as scripts for statistical analysis.
hempelc/metagenomics-vs-totalRNASeq-reference-comparison
A repo for my second PhD chapter
hempelc/apscale
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
hempelc/apscale_wrapper
A wrapper for the metabarcoding pipeline APSCALE to automatize the generation of apscale projects, quality control graphs, post-processing, and taxonomic annotation.
hempelc/european_lakes_diversity
Contains scripts for biodiversity assessments of European lakes
hempelc/exstream-metagenomics-totalrnaseq-ml
Scripts for data-processing and machine learning-based analysis of metagenomics and total RNA-Seq data from the ExStream project
hempelc/hempelc
hempelc/mario_reinforcement_learning_NN
A project to train a NN to beat mario levels using reinforcement learning.
hempelc/mitogenome_assembly_evaluation
Comparing and evaluating mitogenome assemblers
hempelc/MyScripts
Contains all scripts I'm commonly using. Some scripts are under development. Mainly used for backups.
hempelc/sentimental_analysis_GME_twitter
A project for a hackathon to tests if the emotions of GameStop stock (GME)-related tweets were correlated to the GME value during the GME boom on 28th January 2021.
hempelc/kaust_bioinfo_workshop
hempelc/rsde_benthic_prokaryotes
Contains code for the analysis of benthic prokaryotes collected as part of the Red Sea Decade Expedition.
hempelc/SIREN_project
Scripts for the SIREN project