Code for the MOTU section of the paper First, the crudely formatted matrixes are formatted using 'scripts/data_generation/matrix_formatting.R' Then, the resulting matrixes were analysed using the LOTUS package, with 'scripts/data_generation/fine_network_netlevel.R'. This was done on QMUL's apocrita HPCC, using the array job submission script 'scripts/data_generation/in_net_OTU.sh' The data analysis scripts can then be completed in any order, and have summaries of the script at the top of each one