Pinned Repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
Circos-Pipeline
circos pipeline
find_cns
find conserved non-coding sequences (CNS)
sklearn-doc-zh
:book: [译] scikit-learn（sklearn） 中文文档
sprite2.0-pipeline
STARR-seq-Analysis-Pipeline
Commands Template and Module for Automated Analysis of STARR-seq data.
Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
scripts used for processing and analyzing data in the article.
wmb2023_Hanqing-Liu
Code and data sharing of Liu et al. 2023 manuscript
hengbingao's Repositories
hengbingao/sklearn-doc-zh
:book: [译] scikit-learn（sklearn） 中文文档
hengbingao/wmb2023_Hanqing-Liu
Code and data sharing of Liu et al. 2023 manuscript
hengbingao/ArchR_snATAC_snRNA
hengbingao/ATAC-seq
Analysis pipeline for ATAC-seq data
hengbingao/brain-enhancer
hengbingao/CellSpace
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
hengbingao/cisDynet_bulkATAC_RNAseq
An integrated platform for modeling gene-regulatory dynamics and networks
hengbingao/cNMF_elif_removebatch
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
hengbingao/cpgtools
Python package to analyze DNA methylation data
hengbingao/EDTA
Extensive de-novo TE Annotator
hengbingao/GLUE_tools
Graph-linked unified embedding for single-cell multi-omics data integration
hengbingao/GWAS_grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
hengbingao/JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
hengbingao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
hengbingao/Kaya-ListerLab-Tutorial
Info about how to setup, use and work on UWA's Kaya system. Includes a tutorial with example code
hengbingao/LanXuan_scATAC_Rcode
小鼠染色质可及性图谱，使用R进行分析的全套pipelines
hengbingao/LiYangEric_science2023_binglab
hengbingao/MethSCAn_snMethylation
Python package with CLI for downstream analysis of single cell methylation data.
hengbingao/mouse_brain_scRNA
Genearlized mapping scripts for RNA-seq and Patch-seq data
hengbingao/mouse_brain_transcript
iterative clustering pipeline of big single cell datasets.
hengbingao/plot1cell
hengbingao/pytorch_machine-learning
Tensors and Dynamic neural networks in Python with strong GPU acceleration
hengbingao/sciMETv2
hengbingao/SCpubr_Rlike_scanpy
Generate high quality, publication ready visualizations for single cell transcriptomics data.
hengbingao/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
hengbingao/SnapATAC2
Single-cell epigenomics analysis tools
hengbingao/snATAC_NMF_EricYangLi
hengbingao/Taiji_pagerank_GRN_TF
All-in-one analysis pipeline
hengbingao/TFvelo
hengbingao/TOBIAS_ATAC_footprint
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal