Pinned Repositories
atom-language-nextflow
Nextflow syntax highlighter for Atom editor
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bctools
Set of tools for handling barcodes in NGS data.
bioconda-recipes
Conda recipes for the bioconda channel.
Butterknife
cellranger
Nextflow pipeline wrapper for executing Cell Ranger
CNBM
Classification and network base methods (for clinical data regarding cancer)
conST
container-galaxy-sc-tertiary
Galaxy container for single cell RNA-Seq tertiary analysis tools
merge_pcr_duplicates
Tool for iCLIP data analysis. Merges PCR duplicates according to random barcodes that were extracted earlier.
heylf's Repositories
heylf/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
heylf/bioconda-recipes
Conda recipes for the bioconda channel.
heylf/cellranger
Nextflow pipeline wrapper for executing Cell Ranger
heylf/conST
heylf/container-galaxy-sc-tertiary
Galaxy container for single cell RNA-Seq tertiary analysis tools
heylf/dummy_mcmicro
heylf/galaxy
Data intensive science for everyone.
heylf/galaxytools
:microscope::books: Galaxy Tool wrappers
heylf/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
heylf/FastqDemultiplex
A command line utility to demultiplex a fastq file.
heylf/github-slideshow
A robot powered training repository :robot:
heylf/gruffi
Granular Functional Filtering (Gruffi) to isolate stressed cells
heylf/mcmicro
Multiple-choice microscopy pipeline
heylf/mcmicro_QC
Module to prepare QC output from MCMICRO for MultiQC.
heylf/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
heylf/nf_core_mcmicro
heylf/Python_Course_2018_def
heylf/scanpy-scripts
Scripts for using scanpy
heylf/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
heylf/Seurat.utils
Various utility functions for Seurat single-cell analysis
heylf/spatialxe
heylf/StoatyDive
heylf/StoatyPlatsch
heylf/StreetScienceCommunity.github.io
Bring science to the "street"
heylf/test-datasets
Test data to be used for automated testing with the nf-core pipelines
heylf/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
heylf/training-material
A collection of Galaxy-related training material
heylf/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
heylf/website-1
Website hosted at https://openproblems.bio
heylf/website_nextflow
Code and files for the main nf-core website.