hhandika
I study rats and shrews in montane forests of SE Asia and develop tools to make biodiversity research more accessible and inclusive.
Baton Rouge, USA
Pinned Repositories
awesome-javascript
🐢 A collection of awesome browser-side JavaScript libraries, resources and shiny things.
gc-counter
Quickly count DNA sequence GC-content.
myte
An IQ-TREE and Astral wrapper for phylogenomic tree building
nahpu
A cross-platform (mobile and desktop) digital catalog app for natural history collections
resume
Repo for my personal website
rinja
An open platform for a digital field guide
segui
A GUI version of the SEGUL phylogenomic tool
segul
An ultrafast and memory efficient tool for phylogenomics
stats-from-scratch
Statistics from scratch written in multiple programming languages. 🧪
ullar
An ULtrafast, scaLable, Accessible, and Reproducible phylogenomic pipeline
hhandika's Repositories
hhandika/segul
An ultrafast and memory efficient tool for phylogenomics
hhandika/nahpu
A cross-platform (mobile and desktop) digital catalog app for natural history collections
hhandika/resume
Repo for my personal website
hhandika/myte
An IQ-TREE and Astral wrapper for phylogenomic tree building
hhandika/segui
A GUI version of the SEGUL phylogenomic tool
hhandika/awnoa
A cross-platform digital field guide for species identification.
hhandika/rinja
An open platform for a digital field guide
hhandika/ullar
An ULtrafast, scaLable, Accessible, and Reproducible phylogenomic pipeline
hhandika/yap
A single excutable pipeline for phylogenomics
hhandika/bench-parser
Parse segul benchmark
hhandika/bioconda-recipes
Conda recipes for the bioconda channel.
hhandika/chunker
Copy file into multiple batches.
hhandika/contig-symlink-fixer
Super fast symlink fixer/generator for SPAdes contig files.
hhandika/ezp
A command line application to access scientific papers off-campus.
hhandika/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
hhandika/github-workshop
Repository for github workshop in collaboration with Tambora and R Ladies Jakarta
hhandika/hhandika
hhandika/hhandika-docs
Documentation websites for all my work
hhandika/hhandika-web
My new website repo
hhandika/mammaldiversity.github.io
(work in progress) Mammal Diversity Database website
hhandika/mapping-test
Test read mapping binding in rust
hhandika/nahpu-scripts
Scripts to clean NAHPU export data
hhandika/pysegul
Python library using SEGUL API
hhandika/release-test
Test release for github workflow
hhandika/rsegul
R package using segul ultrafast genomic tools
hhandika/segul-bench
Benchmarking segul performance
hhandika/segul-bioconda
A bioconda recipe for SEGUL. Use as reference only.
hhandika/test-repo
eetet
hhandika/utils
Random utility functions
hhandika/wruang
Data wrangling with Rust