hinderling
🔬 Trying to make microscopes smarter 🧫 Studying cellular signalling using optogenetics and microfabrication
Institute of Cell Biology University of Bern
Pinned Repositories
CIED
Cochlear Implant Electrode Detection
hinderling.github.io
A minimalist design exploration
ilastik-napari
ilastik plugin for napari
ImSwitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
keyword_spotting
Keyword Spotting using Dynamic Time Warping (DTW) in Historical Manuscripts
LITOS
LITOS - an easy-to-use tool for optogenetic cell stimulation
mmCoreAndDevices
Micro-Manager's device control layer, written in C++
napari-convpaint
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
napari_pixel_classifier
An Ilastik-like interactive pixel classifier.
pattern_recognition
Group project: Pattern recognition course SP2020
hinderling's Repositories
hinderling/napari_pixel_classifier
An Ilastik-like interactive pixel classifier.
hinderling/keyword_spotting
Keyword Spotting using Dynamic Time Warping (DTW) in Historical Manuscripts
hinderling/CIED
Cochlear Implant Electrode Detection
hinderling/napari-convpaint
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
hinderling/pattern_recognition
Group project: Pattern recognition course SP2020
hinderling/hinderling.github.io
A minimalist design exploration
hinderling/ilastik-napari
ilastik plugin for napari
hinderling/ImSwitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
hinderling/LITOS
LITOS - an easy-to-use tool for optogenetic cell stimulation
hinderling/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
hinderling/napari
napari: a fast, interactive, multi-dimensional image viewer for python
hinderling/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
hinderling/napari-micromanager
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
hinderling/pipeline_MCF10A
Cell segmentation, tracking and ratio calculation pipeline on MCF10A
hinderling/PopGen
Projects in population genetics
hinderling/signature_verification
hinderling/arcos4py
Python package to detect and analyse collective phenomena. Equivalent to the ARCOS R package
hinderling/human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
hinderling/orientation-py
Notebook to extract fibre-like structures and color them by orientation using gabor filters.
hinderling/pymmcore
Python bindings for MMCore, Micro-Manager's device control layer
hinderling/pymmcore-plus
Extensions for pymmcore (micro-manager) providing improved python UX and pure python acquisition engine
hinderling/scDINO
Self-Supervised Vision Transformers for multiplexed imaging datasets
hinderling/scribbles_creator
hinderling/useq-schema
An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.