hirenbioinfo
Bioinformatics Research Scientist at Universitätsklinikum Freiburg, Germany: Interested in microbial genomics, metagenomics, data visualization, data science
Universitätsklinikum FreiburgFreiburg, Germany
Pinned Repositories
bio-docker
Cancer_genomics
Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Data-science-notebooks
Microbiome-Data-analysis
Useful code for metagenome analysis
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Nanopipe
Nextflow pipeline for Oxford Nanopore data analysis
Oxford-nanopore-data-analysis
SQLite-db
Build a SQLite database
hirenbioinfo's Repositories
hirenbioinfo/Nanopipe
Nextflow pipeline for Oxford Nanopore data analysis
hirenbioinfo/bio-docker
hirenbioinfo/Cancer_genomics
hirenbioinfo/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
hirenbioinfo/ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
hirenbioinfo/Data-science-notebooks
hirenbioinfo/Microbiome-Data-analysis
Useful code for metagenome analysis
hirenbioinfo/Oxford-nanopore-data-analysis
hirenbioinfo/SQLite-db
Build a SQLite database
hirenbioinfo/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
hirenbioinfo/docker_pipelines
Nextflow/Docker pipelines for "easy use"
hirenbioinfo/ETL_pipeline
hirenbioinfo/excellxgene
hirenbioinfo/google-colab-notebook
hirenbioinfo/hirenbioinfo
hirenbioinfo/KrumlovSingleCellWorkshop2020
Course Website
hirenbioinfo/nextflow_pipeline
hirenbioinfo/ngs-nextflow-pipeline
A collection of modular and customizable Nextflow pipelines for Next-Generation Sequencing (NGS) data analysis, enabling users to process and analyze NGS data with scalability and reproducibility.
hirenbioinfo/Online_R_learning
Online R learning for applied statistics
hirenbioinfo/RNA_seq
hirenbioinfo/rnaseq-notebook-image
A repository for keeping conda env and docker image file for running RNA-Seq analysis
hirenbioinfo/Rplot
hirenbioinfo/sarscov2phylo
Global phylogenies of SARS-CoV-2 sequences
hirenbioinfo/scanpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scanpy
hirenbioinfo/Slurm-job-submittion
This repository will provide few convenient way to submit a large number of independent processing jobs on Slurm Workload Manager
hirenbioinfo/sylph
ultrafast ANI querying and taxonomic profiling for metagenomic shotgun samples by abundance-corrected minhash.
hirenbioinfo/tensorflow-notebooks-examples
Tensorflow Notebook Examples and Tutorials
hirenbioinfo/training-collection
Collection of bioinformatics training materials
hirenbioinfo/viral-genome-notebook-image
A repo for keeping notebooks for viral genome analysis and data visualization
hirenbioinfo/vprofile-project