See Delve_User_Manual.pdf at FANTOM project for more details of delve.
Example:
docker run --rm -v "$(pwd)":/data -w /data inutano/delve delve index genome.fa
docker run --rm -v "$(pwd)":/data -w /data inutano/delve delve realign alignments.sam
dockerfile for delve, a probabilistic short read aligner used in FANTOM5 and ENCODE
See Delve_User_Manual.pdf at FANTOM project for more details of delve.
Example:
docker run --rm -v "$(pwd)":/data -w /data inutano/delve delve index genome.fa
docker run --rm -v "$(pwd)":/data -w /data inutano/delve delve realign alignments.sam