Pinned Repositories
deBGA
de Bruijn Graph-based read aligner
deBWT
A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
deGSM
de Bruijn Graph Constructor in Scalable Memory
deSALT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
deSAMBA
deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
LAMSA
Long Approximate Matches-based Split Aligner
rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
rMFilter
Acceleration of long read-based structure variation calling by chimeric read filtering
xQTLimp
xQTLImp: efficient and accurate xQTL summary statistics imputation
HIT Bioinformatics Centre's Repositories
hitbc/LAMSA
Long Approximate Matches-based Split Aligner
hitbc/deBGA
de Bruijn Graph-based read aligner
hitbc/deSAMBA
deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
hitbc/deBWT
A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
hitbc/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
hitbc/deGSM
de Bruijn Graph Constructor in Scalable Memory
hitbc/deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
hitbc/xQTLimp
xQTLImp: efficient and accurate xQTL summary statistics imputation
hitbc/AnalysisScripts
hitbc/cuteSV
Long read based human genomic structural variation detection with cuteSV
hitbc/deSALT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
hitbc/panSVR
An NGS SV caller based on pan-genome
hitbc/rCANID
read Clustering and Assembliy-based Novel insertion Detection tool
hitbc/rMFilter
Acceleration of long read-based structure variation calling by chimeric read filtering
hitbc/TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
hitbc/deBGA-VARA
Fast variation-aware read aligner
hitbc/hitbc.github.io
hitbc/rHAT
Alignment tool for noisy long reads
hitbc/ubwt
ubwt: Uni-path BWT utilities