Pinned Repositories
18Genomes
2017-ucsc-metagenomics
Workshop materials for shotgun metagenomics
admixture_graph
Module for analysing admixture graphs
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
AGAT
Another Gff Analysis Toolkit
ann-utils
utils for annotation
annie
👾 Fast, simple and clean video downloader
arxiv-sanity-preserver
Web interface for browsing, search and filtering recent arxiv submissions
hj1994412's Repositories
hj1994412/BioData
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
hj1994412/bioinformatics_train
虽然喜欢做湿实验，但是开始了生信的学习之路
hj1994412/clinker
Gene cluster comparison figure generator
hj1994412/CompareM
A toolbox for comparative genomics.
hj1994412/DataGrabber
hj1994412/dorling_map
hj1994412/ggClusterNet
Microbial ecological network visualization clustering
hj1994412/graftM
GraftM - Rapid community profiles from metagenomes
hj1994412/GToTree
A user-friendly workflow for phylogenomics
hj1994412/icn3d
web-based protein structure viewer and analysis tool interactively or in batch mode
hj1994412/in_situ_genome_sequencing_processing
hj1994412/inStrain
Bioinformatics program inStrain
hj1994412/kent
UCSC Genome Browser source tree. Stable branch: "beta".
hj1994412/kofamscan_plus
hj1994412/MACSE_V2_PIPELINES
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
hj1994412/maffilter
The MafFilter genome alignment processor
hj1994412/McSplicer
hj1994412/MCycDB
hj1994412/msfs_teo
mSFS using a teosinte natural population
hj1994412/NCyc
hj1994412/phast
PHAST
hj1994412/phylo
Helper scripts for making phylogenies
hj1994412/pseudoRef
Make Pseudo-Reference Genome from VCF/BCF
hj1994412/Reprogrammed-EMIRGE
hj1994412/rgeos
:exclamation: This is a read-only mirror of the CRAN R package repository. rgeos — Interface to Geometry Engine - Open Source ('GEOS'). Homepage: https://r-forge.r-project.org/projects/rgeos/ https://libgeos.org http://rgeos.r-forge.r-project.org/index.html
hj1994412/SCycDB
hj1994412/social_niche_breadth_SNB
Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.
hj1994412/topic-functional-annotation
A repository for the lessons and notebooks used for Binder tutorials
hj1994412/treedater
Scalable relaxed clock phylogenetic dating
hj1994412/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms