/GLIMPSE

Low Coverage Calling of Genotypes

Primary LanguageC++MIT LicenseMIT

GLIMPSE Tools

v1.0.0 MIT License

Features

GLIMPSE is a set of tools for phasing and imputation for low-coverage sequencing datasets:

  • GLIMPSE_chunk splits the genome into chunks ready for imputation/phasing
  • GLIMPSE_phase phases & imputes low coverage sequencing data
  • GLIMPSE_ligate concatenates phased chunks of data into chromosome wide files
  • GLIMPSE_sample allows sampling plausible haplotype configurations from the files

Documentation and tutorial

https://odelaneau.github.io/GLIMPSE/

License

This project is licensed under the MIT license - see the LICENSE file for details