hjeremyli

hjeremyli's Stars

• xjdr-alt/entropix

  Entropy Based Sampling and Parallel CoT Decoding

  Language:TypeScript2.7k285

• freeseek/gtc2vcf

  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF

  Language:C14224

• Illumina/GTCtoVCF

  Script to convert GTC/BPM files to VCF

  Language:Python4330

• torvalds/linux

  Linux kernel source tree

  Language:C181k53.6k

• mliezun/bcftools-static

  Static binaries of bcftools

  Language:Shell1

• pierpal/ASMC

  Ascertained Sequentially Markovian Coalescent

  Language:Java23

• mccoy-lab/rhapsodi

  R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.

  Language:R4

• rwdavies/QUILT

  QUILT: Low coverage whole genome sequence imputation with large reference panels

  Language:R5310

• verilylifesciences/genomewarp

  GenomeWarp translates genetic variants from one genome assembly version to another.

  Language:Java9720

• matloff/TidyverseSkeptic

  An opinionated view of the Tidyverse "dialect" of the R language.

  Language:TeX51945

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C669240

• svohr/tilde

  A nuclear option for forensic DNA identification of extremely low-coverage sequence data

  Language:Python62

• rust-bio/rust-htslib

  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

  Language:Rust30278

• odelaneau/GLIMPSE

  Low Coverage Calling of Genotypes

  Language:C++13926

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k599

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C810446

• stefan-schroedl/tabulator

  A set of Unix shell command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, tsv, csv, or flat data file format) with a header line. Provides column reference by name, automatic delimiter and compression detection for per-line transformations, sql-like group-by operation and relational join.

  Language:Perl347