hjmjohnson
My research interest involves accelerating discovery through the efficient analysis of large scale, heterogeneous data with modern High Performance Computing.
The University of IowaIowa City, IA
Pinned Repositories
BRAINS4
BRAINS4
CMake
CMake, the cross-platform, open-source build system.
DTIPrep
DTIPrep
ITK
Insight Toolkit
ITKDevelopmentSupport
One stop 'superbuild' for ITK Developers
SimpleITK
SlicerExecutionModel
tbb
Thread Building Blocks with CMake build
vv
vv
hjmjohnson's Repositories
hjmjohnson/ITK
Insight Toolkit
hjmjohnson/CombineDWIs
Combine Diffusion Weighted Images (NRRD) with potentially different b-values
hjmjohnson/conversion
Various mri conversion/modification scripts
hjmjohnson/CurveCompare
Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
hjmjohnson/dicom3tools
This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.
hjmjohnson/dupeguru
Find duplicate files
hjmjohnson/EvaluateSegmentation
A program to evaluate the quality of image segmentations.
hjmjohnson/GDCM
Grassroots DICOM Mirror
hjmjohnson/hdf5
Official HDF5® Library Repository
hjmjohnson/ITKIOScanco
ITK Image IO for Scanco MicroCT .ISQ files
hjmjohnson/ITKMorphologicalContourInterpolation
An implementation of morphological contour interpolation
hjmjohnson/ITKPhaseSymmetry
Multi-scale Steerable Phase-Symmetry Filters for ITK
hjmjohnson/ITKRLEImage
Run-length encoded memory compression scheme for an itk::Image
hjmjohnson/ITKShape
hjmjohnson/ITKStrain
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.
hjmjohnson/ITKTransformTools
Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller bounding box around a transformed image...
hjmjohnson/ITKUltrasound
ITK module with classes particularly useful for ultrasound.
hjmjohnson/KWStyle
Kitware Style Checker
hjmjohnson/miqa
hjmjohnson/MONAI
AI Toolkit for Healthcare Imaging
hjmjohnson/MultipleImageIterator
ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915
hjmjohnson/nipype
Workflows and interfaces for neuroimaging packages
hjmjohnson/NormalizeDWIGradientVectors
This tool normalizes Diffusion Weighted Images (DWI) gradients.
hjmjohnson/PolyDataCompression
Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is barely noticeable) and enable the use of the wildcard (*) with SlicerExecutionModel.
hjmjohnson/ReadImageHeader
Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
hjmjohnson/ScientificImageAnalysisVisualizationAndArtificialIntelligenceCourse
hjmjohnson/scifio-imageio
SCIFIO ImageIO plugin for ITK
hjmjohnson/SlicerDiffusionQC
Quality checking of DWMRI
hjmjohnson/tclap
Templatized C++ Command Line Parser mirror
hjmjohnson/vxl
A multi-platform collection of C++ software libraries for Computer Vision and Image Understanding.