hjsbio

Pinned Repositories

FakIR
An R package for detecting and interpreting Intron Retention (IR) events
Language:R0 0 00
genomics_general
General tools for genomic analyses.
Language:Python0 0 00
IntEREst
IntEREst: Intron Exon Retention Estimator
Language:R00
intron-retention-scripts
Scripts for intron retention analysis from RNA-Seq data
Language:Python0 0 00
intron_retention_analysis_senescence
Intron retention analysis for RNA-seq of cellular senescence models
Language:Python0 0 00
IntronExon_Junction_Splice_Ratio
Code and associated annotation file to count the ratio of spliced an unspliced reads for all intron-containing genes.
Language:R0 0 00
IRFinder
Detecting intron retention from RNA-Seq experiments
Language:C++0 0 00
irsim
IRSim: RNA-Seq Simulator for Intron Retention in Coding RNA
Language:Python0 0 00
PolSter
Pol II density estimated by statistical inference of transcription elongation rates by total RNA-seq
Language:C0 0 00
pugz
Truly parallel gzip decompression
Language:C++0 0 00

hjsbio's Repositories

hjsbio/FakIR
An R package for detecting and interpreting Intron Retention (IR) events
Language:R0 0 00
hjsbio/genomics_general
General tools for genomic analyses.
Language:Python0 0 00
hjsbio/IntEREst
IntEREst: Intron Exon Retention Estimator
Language:R00
hjsbio/intron-retention-scripts
Scripts for intron retention analysis from RNA-Seq data
Language:Python0 0 00
hjsbio/intron_retention_analysis_senescence
Intron retention analysis for RNA-seq of cellular senescence models
Language:Python0 0 00
hjsbio/IntronExon_Junction_Splice_Ratio
Code and associated annotation file to count the ratio of spliced an unspliced reads for all intron-containing genes.
Language:R0 0 00
hjsbio/IRFinder
Detecting intron retention from RNA-Seq experiments
Language:C++0 0 00
hjsbio/irsim
IRSim: RNA-Seq Simulator for Intron Retention in Coding RNA
Language:Python0 0 00
hjsbio/PolSter
Pol II density estimated by statistical inference of transcription elongation rates by total RNA-seq
Language:C0 0 00
hjsbio/pugz
Truly parallel gzip decompression
Language:C++0 0 00
hjsbio/Python-100-Days
Python - 100天从新手到大师
Language:Jupyter Notebook0 0
hjsbio/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Language:R0 0
hjsbio/sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.
hjsbio/scRNA.seq.course
Analysis of single cell RNA-seq data course
hjsbio/SQUID
Stringent Quantitation of Unspliced Intron by Deep-sequencing
Language:Python0 0