Pinned Repositories
OMArk
3d-dna
3D de novo assembly (3D DNA) pipeline
ampir
antimicrobial peptide prediction in R
Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
AsmHighlighter
fork of http://asmhighlighter.codeplex.com/
assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake
baiduyun
一个免费开源的网盘下载助手
BamDeal
BamDeal: a comprehensive toolkit for bam manipulation
Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
hlkfoz's Repositories
hlkfoz/macrel
Predict AMPs in (meta)genomes and peptides
hlkfoz/OMArk
hlkfoz/prompt-engineering-for-developers
面向开发者的 LLM 入门教程，吴恩达大模型系列课程中文版
hlkfoz/LangGPT
LangGPT: Empowering everyone to become a prompt expert!🚀 Structured Prompt，Language of GPT, 结构化提示词，结构化Prompt
hlkfoz/gpt_academic
为ChatGPT/GLM提供实用化交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
hlkfoz/ampir
antimicrobial peptide prediction in R
hlkfoz/chatgpt-prompts-for-academic-writing
This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.
hlkfoz/UserScript
🐵 自用的一些乱七八糟 油猴脚本~
hlkfoz/CafePlotter
A tool for plotting CAFE5 gene family expansion/contraction result
hlkfoz/ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复
hlkfoz/myscripts
hlkfoz/iAMPCN
hlkfoz/assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake
hlkfoz/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
hlkfoz/ccgpWorkflow
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
hlkfoz/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
hlkfoz/EndHiC
EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
hlkfoz/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
hlkfoz/BamDeal
BamDeal: a comprehensive toolkit for bam manipulation
hlkfoz/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
hlkfoz/nanopolish
Signal-level algorithms for MinION data
hlkfoz/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
hlkfoz/k-count-nf
A nextflow pipeline to count k-mers and estimate genome size from WGS data
hlkfoz/OrthoFinder
Phylogenetic orthology inference for comparative genomics
hlkfoz/Python-100-Days
Python - 100天从新手到大师
hlkfoz/rfam-production
Rfam production pipeline
hlkfoz/jiffy-infernal-hmmer-scripts
Simple perl scripts for dealing with infernal and/or hmmer output/input.
hlkfoz/NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
hlkfoz/genometools
GenomeTools genome analysis system.
hlkfoz/Jstacs