Pinned Repositories
hmartiniano's Repositories
hmartiniano/ngest
hmartiniano/gprofiler_custom_gmt
hmartiniano/alphafold
Open source code for AlphaFold.
hmartiniano/annot
Snakemake pipeline for variant annotation with VEP
hmartiniano/bio_embeddings
Get protein embeddings from protein sequences
hmartiniano/bioinformatics-cookiecutter-template
A cookiecutter template to be used in bioinformatics and machine learning projects
hmartiniano/biokge
hmartiniano/bridge
hmartiniano/cdlib
Community Discovery Library - (for networkx and igraph)
hmartiniano/ClassifyCNV-docker
Dockerfile for ClassifyCNV
hmartiniano/dgl-ke
High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.
hmartiniano/disorder
hmartiniano/docker_cnvnator
Docker image for CNVnator on ubuntu 16.04
hmartiniano/elasticsearch_loader
A tool for batch loading data files (json, parquet, csv, tsv) into ElasticSearch
hmartiniano/faz
Data workflow tool with a syntax similar to drake.
hmartiniano/gatk4-jupyter-notebook-tutorials
This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
hmartiniano/gnomad_python_api
š§¬ gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).
hmartiniano/go_genes_semsim_parallel
R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package
hmartiniano/goatools
Python library to handle Gene Ontology (GO) terms
hmartiniano/GraRep
A SciPy implementation of "GraRep: Learning Graph Representations with Global Structural Information" (WWW 2015).
hmartiniano/GSEApy
Gene Set Enrichment Analysis in Python
hmartiniano/hpo_enrichment
hmartiniano/intervar-docker
Dockerfile for InterVar
hmartiniano/learning_resources
hmartiniano/llm-examples
Streamlit LLM app examples for getting started
hmartiniano/optuna
A hyperparameter optimization framework
hmartiniano/pandas-profiling
Create HTML profiling reports from pandas DataFrame objects
hmartiniano/scrape-covid-sines
hmartiniano/streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
hmartiniano/test-blog
test-blog