Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
biostar-recipes
Tools, Pipelines for the Biostar Engine
diamond
Accelerated BLAST compatible local sequence aligner.
edda
Source for course materials at http://ged.msu.edu/angus/
exonerate
A generic tool for sequence alignment
exonerate-gff3
exonerate fork with added gff3 support
FAMSA
Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM)
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
perl-virtualenv
Virtual Environment for Perl
placenta
reproduce the Bushman placenta paper
hmontenegro's Repositories
hmontenegro/placenta
reproduce the Bushman placenta paper
hmontenegro/bioconda-recipes
Conda recipes for the bioconda channel.
hmontenegro/biostar-recipes
Tools, Pipelines for the Biostar Engine
hmontenegro/diamond
Accelerated BLAST compatible local sequence aligner.
hmontenegro/edda
Source for course materials at http://ged.msu.edu/angus/
hmontenegro/exonerate
A generic tool for sequence alignment
hmontenegro/exonerate-gff3
exonerate fork with added gff3 support
hmontenegro/FAMSA
Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM)
hmontenegro/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
hmontenegro/perl-virtualenv
Virtual Environment for Perl
hmontenegro/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
hmontenegro/trinotateR
Trinotate annotation report summaries in R