hoelzer-lab/hypro
Extend hypothetical prokka protein annotations using additional homology searches against larger databases
PythonGPL-3.0
Issues
- 2
File not found error when executed in directory
#27 opened by hoelzer - 1
Path mmseqs2.sh
#26 opened by hoelzer - 18
Conda recipe
#7 opened by hoelzer - 2
Turn into nextflow workflow
#28 opened by phiweger - 2
Update README
#35 opened by hoelzer - 15
- 0
Nextflow: clean up code
#33 opened by hoelzer - 3
Nextflow: summary output
#32 opened by hoelzer - 4
Nextflow: mmseqs2 handling
#31 opened by hoelzer - 4
- 0
GitHub release when we are fine with everything
#15 opened by hoelzer - 2
protocol for conda recipe
#12 opened by marlt - 1
mmseqs2.sh in conda recipe
#14 opened by hoelzer - 3
No valid license string in recipe
#19 opened by marlt - 0
Write test section for recipe
#23 opened by marlt - 2
mmseqs2 filtering
#18 opened by hoelzer - 8
additional databases
#6 opened by marlt - 2
Limit thread usage
#24 opened by marlt - 11
Result DB not updated by mmseqs search
#21 opened by marlt - 5
conda-build not working
#16 opened by hoelzer - 1
Remove some of the test data
#20 opened by marlt - 0
clean up help message
#13 opened by marlt - 1
MMSeqs2 search protein - protein
#11 opened by marlt - 9
- 9
mmseq2 database download and indexing
#3 opened by hoelzer - 10
- 3
- 2
FileNotFoundError: [Errno 2] No such file or directory: 'run/prokka/testrun.gbk'
#10 opened by hoelzer - 2
Provide full and spare mode on hyprot selection
#5 opened by marlt - 2
mkdir output directory if it is not present
#1 opened by hoelzer - 2