Sortmerna can not deal with long reads
hoelzer opened this issue · 0 comments
hoelzer commented
Command error:
ERROR: at least one of your reads is > 30000 nt
Please check your reads or contact the authors.
Seems that SMR can not deal with reads longer 30kb which might happen for nanopore. Rare for transcriptome, but can. Maybe in case of --nanopore input we ignore errors for SMR... not the nicest solution but a quick fix