hoelzer-lab/rnaflow

Issues

• hista2 error using singularity profile

  #238 opened 3 months ago by chrissikath
  7

• Fastq preprocessing causing hisat2 error

  #237 opened 7 months ago by DAWells
  5

• About the batch effect

  #236 opened 9 months ago by zhangwenda0518
  3

• Piano and WebGestalt

  #229 opened 9 months ago by m-jahani
  4

• Issue with comparisons.csv file

  #234 opened 10 months ago by mglgc
  4

• Dont use characters other than letters, numbers, '_' and '.' in the design

  #235 opened 10 months ago by hoelzer
  0

• singularity problem

  #232 opened a year ago by mictadlo
  13

• Adding Sus scrofa to Piano and Webgestalt

  #230 opened a year ago by hoelzer
  1

• Deseq2 error

  #228 opened a year ago by AnneBoshove
  18

• ggkegg package

  #227 opened a year ago by hoelzer
  0

• WEBGESTALT using KEGG 2019 Database

  #226 opened a year ago by marlt
  0

• error in DESeq2 step

  #225 opened a year ago by m-jahani
  3

• Webgestalt: Organism is missing Error

  #223 opened a year ago by hoelzer
  2

• Webgestalt error on restricted HPC

  #222 opened a year ago by hoelzer
  1

• ERROR ~ Error executing process > 'download_sortmerna:sortmernaGet'

  #219 opened 2 years ago by apkbala107
  1

• Help running test profile

  #217 opened 2 years ago by telatin
  4

• Improved visuals

  #218 opened 2 years ago by hoelzer
  0

• When i execute the pipeline i am getting -> ERROR ~ Error executing process > 'download_sortmerna:sortmernaGet'

  #216 opened 2 years ago by apkbala107
  16

• A question that no 07-DifferentialExpression generated ！

  #192 opened 2 years ago by zhangwenda0518
  16

• Getting error Trying to give AWS S3 Bucket data as the input for this pipeline.

  #215 opened 2 years ago by apkbala107
  3

• ~Missing hisat2 index file reports an error~ Improve UX for genome concatenation

  #214 opened 2 years ago by weir12
  2

• Padj Value for Volcano Plot

  #213 opened 2 years ago by tensulin
  1

• Rebuild deseq image

  #211 opened 2 years ago by tensulin
  5

• ResolvePackageNotFound: isa-l

  #212 opened 2 years ago by th-of
  6

• PCAs have only one data point

  #203 opened 2 years ago by hoelzer
  2

• ReportingTools does not finish the HTML plot

  #204 opened 2 years ago by hoelzer
  0

• Warning use rowNames instead of row.names

  #202 opened 2 years ago by hoelzer
  0

• Pipeline not starting on HPC due to nf-tower plugin

  #206 opened 2 years ago by fischer-hub
  5

• Provide alternative mapping tools

  #205 opened 2 years ago by hoelzer
  0

• Running test profile w/ conda or mamba fails

  #201 opened 2 years ago by hoelzer
  1

• possible deseq container error

  #198 opened 2 years ago by danchubb
  8

• directionality of the comparison from Deseq2 output

  #199 opened 2 years ago by shalinisingh65
  5

• featurecounts strandedness issue

  #197 opened 2 years ago by danchubb
  9

• Strandedness

  #176 opened 2 years ago by hoelzer
  2

• Error: expression_reference_based:webgestalt (MAQCA_vs_MAQCB)

  #191 opened 2 years ago by hoelzer
  1

• clean custom annotations from bad character

  #177 opened 3 years ago by klamkiew
  4

• Typo in README for single-end example CSV

  #173 opened 3 years ago by hoelzer
  4

• Process `expression_reference_based:tpm_filter` input file name collision

  #190 opened 3 years ago by AGunnell77
  18

• Error executing process > 'expression_reference_based:deseq2 (1)'

  #187 opened 3 years ago by Gavin098
  14

• Error report: Error executing process > 'preprocess_illumina:fastp (MAQCB_rep1)'

  #186 opened 3 years ago by sttongjai
  1

• Error: ResolvePackageNotFound libgcc-ng, libstdcxx-ng, and isa-l

  #185 opened 3 years ago by sttongjai
  1

• MultiQC conda environment does not contain necessary interpreter

  #183 opened 3 years ago by fischer-hub
  7

• Problem: Execute a test run has been doing great, but get stuck at deseq2 forever.

  #182 opened 3 years ago by sttongjai
  4

• Error after quick installation - ResolvePackageNotFound: libgcc-ng[version='>=9.4.0']

  #179 opened 3 years ago by pkerrwall
  1

• parameter skip_read_preprocessing not supported

  #178 opened 3 years ago by kheinze
  1

• Rattle ONT assembly cDNA vs dRNA

  #163 opened 3 years ago by hoelzer
  0

• Sortmerna can not deal with long reads

  #162 opened 3 years ago by hoelzer
  0

• conda install error

  #153 opened 3 years ago by rob123king
  8

• Quantification of Nanopore reads

  #154 opened 3 years ago by hoelzer
  0

• Conda fails to create MultiQC and DEseq2 environments

  #151 opened 3 years ago by AlbatrosHurleur
  11