Rebuild deseq image
tensulin opened this issue · 5 comments
Hi, the URL for WebGestalt changed to https and a new WebGestaltR version is out which reflects this change. The deseq image therefore probably needs to be rebuild.
Thanks in advance!
Hey @tensulin thanks for the information!
Currently, the Docker image installsr-webgestaltr=0.4.4 which seems to still be the up-to-date version (and which we also use in the Conda env. (https://anaconda.org/conda-forge/r-webgestaltr)
Maybe Conda is just not updated yet w/ the newer version 0.4.5 (https://github.com/bzhanglab/WebGestaltR/releases/tag/v0.4.5)?
Once it's on conda, we're happy to update. Did something else change? Or should everything else still work fine when updating 0.4.4 >> 0.4.5?
Hi @hoelzer you are welcome. I very much appreciate your workflow, the output was very nice!
Conda now reflects the updated version (0.4.5).
https://anaconda.org/conda-forge/r-webgestaltr
Nope, only https upgrade. However, the update is critical as the old package does not work anymore, unless you supply the hostname with the https URL.
Great, thanks and good to know!
I updated the container so we can add and test it in the pipeline, it now has webgestalt 0.4.5
docker pull nanozoo/deseq2:1.34.0--ac0d807
Nice! Thanks a lot 👍