Pinned Repositories
hoffmangroup's Repositories
hoffmangroup/pdfcomments
hoffmangroup/umap
hoffmangroup/acidbio
hoffmangroup/segway
Application for semi-automated genomic annotation.
hoffmangroup/polyidus
Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
hoffmangroup/mccf1
hoffmangroup/virchip
hoffmangroup/peako
Software for finding transcription factor binding motifs using knockout controls, in CUT&RUN data.
hoffmangroup/allmytexs
hoffmangroup/genomedata
The Genomedata format for storing large-scale functional genomics data.
hoffmangroup/segzoo
hoffmangroup/dnamod
hoffmangroup/segway-mailing-list-archives
Archive of the Segway University of Washington mailing list
hoffmangroup/2020behst
hoffmangroup/2020spikein
All code pertaining to the "Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls" manuscript
hoffmangroup/2021_hESC_3D_Genome
hoffmangroup/2022modTFBSs
Public repository of additional scripts used in our expanded alphabet manuscript.
hoffmangroup/BEHST
hoffmangroup/BEHST-2022
hoffmangroup/cla
Tools for Cell Lineage Analysis
hoffmangroup/claweb
hoffmangroup/cytomod
hoffmangroup/genomedata-mailing-list-archive
Archive of the Genomedata University of Washington mailing list
hoffmangroup/nour
Lab notebook for my Fall 2023 rotation in the Hoffman Lab
hoffmangroup/pdfuris
hoffmangroup/segtools
Package for analysis of genomic segmentations.
hoffmangroup/semi-supervised-segway-workflow
Snakemake workflow to reproduce the results from "Semi-supervised segmentation and genome annotation".
hoffmangroup/sequencing-resolution-analysis
hoffmangroup/skrrf
hoffmangroup/vcall