Pinned Repositories
AMASS
Error-free prokaryotic OTU reconstruction
awesome-synthetic-biology
A curated list of Synthetic Biology / Genetic Engineering projects, articles and resources. The main idea is that everyone can contribute here, so we can have a central repository of informations about this fascinating subject that we all can keep up-to-date.
bigBlastParser
Parse (very big) NCBI BLAST xml output files (very fast) into an SQLite DB.
bioawk
BWK awk modified for biological data
cn-avg
Copy Number AVG pipeline for the analysis of NGS Cancer data
PyroTools
A kit of tools developed in our group, including PyroHMMsnp, PyroHMMvar, GraphReAlign, etc
RAMBL
Large-scale 16S gene assembly using metagenomic shotgun sequences
RBRA
Reference-based ribosome assembly
scSimulator
Nonparametric scRNA-seq simulator
SuffixArray
To build and manipulate suffix array
homopolymer's Repositories
homopolymer/RAMBL
Large-scale 16S gene assembly using metagenomic shotgun sequences
homopolymer/PyroTools
A kit of tools developed in our group, including PyroHMMsnp, PyroHMMvar, GraphReAlign, etc
homopolymer/RBRA
Reference-based ribosome assembly
homopolymer/scSimulator
Nonparametric scRNA-seq simulator
homopolymer/SuffixArray
To build and manipulate suffix array
homopolymer/AMASS
Error-free prokaryotic OTU reconstruction
homopolymer/awesome-synthetic-biology
A curated list of Synthetic Biology / Genetic Engineering projects, articles and resources. The main idea is that everyone can contribute here, so we can have a central repository of informations about this fascinating subject that we all can keep up-to-date.
homopolymer/bigBlastParser
Parse (very big) NCBI BLAST xml output files (very fast) into an SQLite DB.
homopolymer/bioawk
BWK awk modified for biological data
homopolymer/cn-avg
Copy Number AVG pipeline for the analysis of NGS Cancer data
homopolymer/CROP
CROP: Clustering 16s rRNA for OTU Prediction
homopolymer/FESCO
Fast and error-tolerant long sequence comparison
homopolymer/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
homopolymer/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
homopolymer/Miscellaneous
homopolymer/pyglmnet
Python implementation of elastic-net regularized generalized linear models
homopolymer/RAMBL_Test
Test example for RAMBL install
homopolymer/RBRA_Test
Test example for RBRA
homopolymer/SCAT
homopolymer/scClassifier
Single Cell Characterization
homopolymer/serialization
Boost.org serialization module
homopolymer/single_cell_intestine
R code for single-cell analysis of intestinal epithelial cells
homopolymer/skizze
A probabilistic data structure service and storage
homopolymer/SuffixTree
To build and manipulate suffix tree
homopolymer/swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
homopolymer/tabtk
Toolkit for processing TAB-delimited format
homopolymer/zengfeng.github.io