Pinned Repositories
BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
CITEseq_MM_CoV_Vac
This repository features the analysis code for the manuscript "2023 Enssle JC et al., Cytokine-responsive T- and NK-cells portray SARS-CoV-2 vaccine-responders and infection in multiple myeloma patients".
DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
enhancers
Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
MAmotif
An integrative toolkit for detecting cell type-specific regulators
MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets.
MotifScan
A motif discovery tool to detect the occurrences of known motifs
hongduosun's Repositories
hongduosun/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
hongduosun/BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
hongduosun/CITEseq_MM_CoV_Vac
This repository features the analysis code for the manuscript "2023 Enssle JC et al., Cytokine-responsive T- and NK-cells portray SARS-CoV-2 vaccine-responders and infection in multiple myeloma patients".
hongduosun/DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
hongduosun/enhancers
Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
hongduosun/NSCLC-immunotherapy
hongduosun/PanCAF
hongduosun/scPLC
Codes for the scPLC project
hongduosun/singularity-sc-rhapsody
hongduosun/Eosinophils_scRNASeq
Codes for analyses in the titled "Active eosinophils regulate host defense and immune responses during intestinal inflammation"
hongduosun/luca
Single-cell Lung Cancer Atlas with 1.2M cells