hongruhu
CompBio | Applied ML @ Microsoft Research and University of California Davis
Microsoft Research | University of California, DavisDavis
hongruhu's Stars
krahets/hello-algo
《Hello 算法》:动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新,English version ongoing
wandb/wandb
The AI developer platform. Use Weights & Biases to train and fine-tune models, and manage models from experimentation to production.
ysh329/deep-learning-model-convertor
The convertor/conversion of deep learning models for different deep learning frameworks/softwares.
GFNOrg/gflownet
Generative Flow Networks
KimMeen/Awesome-GNN4TS
[TPAMI 2024] Awesome Resources of GNNs for Time Series Analysis (GNN4TS)
zdhNarsil/Awesome-GFlowNets
A curated list of resources about generative flow networks (GFlowNets).
bioFAM/MOFA2
Multi-Omics Factor Analysis
GFNOrg/torchgfn
GFlowNet library
recursionpharma/gflownet
GFlowNet library specialized for graph & molecular data
samsinai/FLEXS
Fitness landscape exploration sandbox for biological sequence design.
Zhihan1996/DNABERT_2
The official implementation of DNABERT-2.
Tikquuss/GflowNets_Tutorial
GflowNets, MCMC, Metropolis-Hasting, Gibbs sampling, Metropolis-adjusted Langevin, Inverse Transform Sampling, Acceptance-Rejection Method and Important Sampling
brandontrabucco/design-bench
Benchmarks for Model-Based Optimization
GFNOrg/EB_GFN
Code for our paper "Generative Flow Networks for Discrete Probabilistic Modeling"
MJ10/BioSeq-GFN-AL
Code for "Biological Sequence Design with GFlowNets", 2022
a96123155/UTR-LM
jmschrei/tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
av1659/fbgan
johli/seqprop
Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
augustwester/gflownet
A PyTorch implementation of a Generative Flow Network (GFlowNet) proposed by Bengio et al. (2021)
GFNOrg/GFlowNet-EM
Code for GFlowNet-EM, a novel algorithm for fitting latent variable models with compositional latents and an intractable true posterior.
bioFAM/mofapy2
Multi-omics factor analysis v2
johli/genesis
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
kaist-silab/bootgen
[NeurIPS 23] Official code for BootGen: "Bootstrapped Training of Score Conditioned Generator for Offline Biological Design"
sunnsset/Benchmarking_single-cell_RNA_and_ATAC_data_integration
lizzij/GFlowNets-DNA-Motif
DNA Motif Mining Using GFlowNets
quon-titative-biology/HLiCA
AlxBouras/GFlowNet
A simple implementation of a GFlowNet using PyTorch
rganti/gflownets_bio_design
An implementation of GFlowNets for biological sequence design inspired by Bengio paper.
GFNOrg/gflownet-dna