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This project aims to centralize and make accessible some scripts that the community using biomaj or biomaj-manager have developped for their own usage.
- Scripts
bm_bank_sections.py
: This script is used to get the list of available db or db sub sections for a particular tool. For now onlyblast2
andgolden
tool are supported. To use it, you'll need to havebiomaj-manager
installed.- Usage:
bm_bank_sections.py <bank> <tool>
- Output: A db/sub db per line
<protein db a> <protein db b> ... <protein sub db 1> <protein sub db 2> ... <nucleic db a> <nucleic db b> ... <nucleic sub db 1> <nucleic sub db 2>
- Usage: