/biomaj-scripts

Tools and scripts using biomaj and biomaj-manager.

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

biomaj-scripts

================

This project aims to centralize and make accessible some scripts that the community using biomaj or biomaj-manager have developped for their own usage.

  • Scripts
    • bm_bank_sections.py: This script is used to get the list of available db or db sub sections for a particular tool. For now only blast2 and golden tool are supported. To use it, you'll need to have biomaj-manager installed.
      • Usage: bm_bank_sections.py <bank> <tool>
      • Output: A db/sub db per line
      <protein db a>
      <protein db b>
      ...
      <protein sub db 1>
      <protein sub db 2>
      ...
      <nucleic db a>
      <nucleic db b>
      ...
      <nucleic sub db 1>
      <nucleic sub db 2>