hrk2109

Pinned Repositories

10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
Language:R0 0 00
affymetrix-power-tools
Language:HTML0 2 00
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Language:Python0 1 00
alfred
BAM Statistics, Feature Counting and Annotation
Language:C++0 2 00
alpine
Modeling and correcting fragment sequence bias for RNA-seq
Language:R0 2 00
combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
Language:Python1 1 00

hrk2109's Repositories

hrk2109/anndata
Annotated data.
Language:Python
hrk2109/atlantis
Code used for biomarker discovery using party (building conditional random forests)
Language:R
hrk2109/barcoding
Lima - Demultiplex Barcoded PacBio Samples
Language:R
hrk2109/CellProfiler
An open-source application for biological image analysis
Language:Python1 0
hrk2109/ceres
Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
Language:R
hrk2109/dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
Language:Shell2 0
hrk2109/dtangle
Cell type deconvolution from high-throughput gene expression profiling experiments.
Language:HTML2 0
hrk2109/extraterm
The swiss army chainsaw of terminal emulators
Language:C++2 0
hrk2109/hdf5r
Language:C
hrk2109/hisat2
Graph-based alignment (Hierarchical Graph FM index)
Language:C++1 0
hrk2109/histoCAT
Histology Topography Cytometry Analysis Toolbox
Language:MATLAB1 0
hrk2109/ImcPluginsCP
CellProfiler plugins for multiplexed image analysis
Language:Python1 0
hrk2109/imctools
Tools to handle IMC data
Language:Python
hrk2109/ldsc
LD Score Regression (LDSC)
Language:Python1 0
hrk2109/lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
Language:Go
hrk2109/mbpfan
A simple daemon to control fan speed on all MacBook/MacBook Pros (probably all Apple computers) for Linux 3.x.x and 4.x.x
Language:C
hrk2109/monocle-release
Language:R
hrk2109/phylowgs
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
Language:Python2 0
hrk2109/rtl8812au
Realtek 802.11n WLAN Adapter Linux driver
Language:C1 0
hrk2109/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python1 0
hrk2109/scRNA-Seq-TCC-prep
Preprocessing of single-cell RNA-Seq data for input to kallisto
Language:Jupyter Notebook1 0
hrk2109/seqCNA
Copy number analysis of shallow whole genome sequencing
Language:R
hrk2109/sequelpro
MySQL/MariaDB database management for macOS
Language:Objective-C1 0
hrk2109/sircel
Identify cell barcodes from single-cell genomics sequencing experiments
Language:Jupyter Notebook
hrk2109/spectre-meltdown-checker
Spectre & Meltdown vulnerability/mitigation checker for Linux
Language:Shell
hrk2109/sscClust
simpler single cell RNAseq data clustering
Language:R
hrk2109/sshfs
A network filesystem client to connect to SSH servers
Language:C
hrk2109/TrustScore
To Trust Or Not To Trust A Classifier. A measure of uncertainty for any trained (possibly black-box) classifier which is more effective than the classifier's own implied confidence (e.g. softmax probability for a neural network).
Language:Jupyter Notebook2 0
hrk2109/ubuntu-cleaner
Ubuntu Cleaner is a tool that makes it easy to clean your ubuntu system.
Language:Python1 0
hrk2109/yakyak
Desktop chat client for Google Hangouts
Language:CoffeeScript