Pinned Repositories
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
autoprimer3
A program to automatically generate primer designs to genes and genomic coordinates using primer3
bash_fundamentals
Introduction to Bash for bioinformatics
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
first-steps-with-R-training
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
gCNV-analysis-tools
Analysis tools for gCNV
REViewer
A tool for visualizing alignments of reads in regions containing tandem repeats
sideRETRO
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
unix-first-steps-training
SIB First Steps with UNIX course
VGC
Variant Graph Craft (VGC) is an interactive genomic variant visualization program.
hsannife's Repositories
hsannife/autoprimer3
A program to automatically generate primer designs to genes and genomic coordinates using primer3
hsannife/gCNV-analysis-tools
Analysis tools for gCNV
hsannife/sideRETRO
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
hsannife/unix-first-steps-training
SIB First Steps with UNIX course
hsannife/VGC
Variant Graph Craft (VGC) is an interactive genomic variant visualization program.
hsannife/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
hsannife/bash_fundamentals
Introduction to Bash for bioinformatics
hsannife/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
hsannife/ccrhtml
A small repo for storing the code for making the files and html for CCRs.
hsannife/cisregulatoryV
cis-regulatory region variant curation
hsannife/ELIXIR-TrP-FAIR-training-handbook
Train-the-trainer handbook for making training materials FAIR
hsannife/ExpansionHunter
A tool for estimating repeat sizes
hsannife/figeno
Tool for plotting sequencing data along genomic coordinates.
hsannife/first-steps-with-R-training
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
hsannife/GBSapp
Automated Pipeline for Variant/Haplotype Calling and Filtering
hsannife/genomics_shortcuts
hsannife/intermediate-python-training
hsannife/nanopack
An overview of all nanopack tools
hsannife/pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
hsannife/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
hsannife/REViewer
A tool for visualizing alignments of reads in regions containing tandem repeats
hsannife/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
hsannife/DeNovoCNN
A deep learning approach to de novo variant calling in next generation sequencing data
hsannife/DISCVRSeq
A collection of command line tools for working with sequencing data
hsannife/HiFi-SVTopo
Complex structural variant visualization for HiFi sequencing data
hsannife/Patcher64Plus-Tool
Patcher64+ Tool
hsannife/ReViewCNV
hsannife/SVbyEye
hsannife/vaRHC
hsannife/VoltRon
VoltRon: spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration