Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
Gibbs
A Perl module implementing a Gibbs sampler
HMM
A Perl implementation of Hidden Markov Models
InformationTheory
Perl tools for information theory application and calculations
KmerTK
A collection of bioinformatics scripts for operating with sets of k-mers derived from genome sequences.
metaXplore
A modular bioinformatics pipeline to conduct basic, rapid data exploration of metagenomic sequencing data at a glance.
nexus_utils
A collection of homebrew scripts for operating on Nexus-formatted biological sequence data
phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
tautyping
This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic
hseabolt's Repositories
hseabolt/tautyping
This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic
hseabolt/metaXplore
A modular bioinformatics pipeline to conduct basic, rapid data exploration of metagenomic sequencing data at a glance.
hseabolt/nexus_utils
A collection of homebrew scripts for operating on Nexus-formatted biological sequence data
hseabolt/phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
hseabolt/bioconda-recipes
Conda recipes for the bioconda channel.
hseabolt/genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
hseabolt/Gibbs
A Perl module implementing a Gibbs sampler
hseabolt/HMM
A Perl implementation of Hidden Markov Models
hseabolt/InformationTheory
Perl tools for information theory application and calculations
hseabolt/KmerTK
A collection of bioinformatics scripts for operating with sets of k-mers derived from genome sequences.
hseabolt/Kolander
highly flexible sequencing read sieve for taxonomic filtering of next-generation sequencing data.
hseabolt/Markov
A Perl implementation of discrete-time Markov chains
hseabolt/matrix_power_tools
A command-line set of power tools for matrix operations, including data munging, resampling, statistics, information content, and linear algebra.
hseabolt/MLST
A Perl module for multilocus sequence typing applications (MLST)
hseabolt/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
hseabolt/mycosnp-nf
CDCgov/mycosnp-nf
hseabolt/ProbabilityDistributions
Perl implementations of various common probability distributions for data science
hseabolt/rankGenes
An old workflow for identifying genes whose phylogenetic signal closely matches that of WGS
hseabolt/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
hseabolt/vectorborne_SIR
Repo for CSE8803 course project covering extensions to vectorborne disease compartment models
hseabolt/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples