Pinned Repositories
bioworkflows
In-house computational biology workflows at Columbia Neurology
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
neuro-twas
Development code (private repo) for TWAS related multiomic gene-mapping in Alzheimer's disease data
ADGWAS_rare_variant
This is for ADGWAS rare variants projects in Goate's Lab
bioworkflows
In-house computational biology workflows at Columbia Neurology
cugg
Collection of (in-house) Python utilities from Gao Wang's Group
DailyReport
Daily report source code for China US Health Summit group
data_wrangling_1
GitHub for dw 1
DataSci_First_Git
First git example done in class
snmulti-QTL-analysis
Analysis notebook for snmulti-QTL analysis
hsun3163's Repositories
hsun3163/snmulti-QTL-analysis
Analysis notebook for snmulti-QTL analysis
hsun3163/ADGWAS_rare_variant
This is for ADGWAS rare variants projects in Goate's Lab
hsun3163/bioworkflows
In-house computational biology workflows at Columbia Neurology
hsun3163/cugg
Collection of (in-house) Python utilities from Gao Wang's Group
hsun3163/DailyReport
Daily report source code for China US Health Summit group
hsun3163/data_wrangling_1
GitHub for dw 1
hsun3163/DataSci_First_Git
First git example done in class
hsun3163/neuro-apex
This repo host the development of apex prototypes
hsun3163/Deep-learning-with-PyTorch-and-GCP
Tutorial and framework code for deep learning in biomedical applications with PyTorch and (if necessary) Google Cloud Platform.
hsun3163/fsusieR
Draft package for "Sum of Single Functions" method.
hsun3163/fusion_twas
methods for functional summary-based imputation
hsun3163/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
hsun3163/hs3163_hw5
hsun3163/hsun3163.github.io
hsun3163/ipynb_viewer
hsun3163/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
hsun3163/p8105_hw1_hs3163g
This is the GitHub repo for first hw in data science class.
hsun3163/p8105_hw2_hs3163
This is the GitHub repo for hw2 of data sci
hsun3163/P8105_HW3_HS3163
Github for hw 3 data science
hsun3163/p8130_HW6
HW6
hsun3163/pecotmr
Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
hsun3163/recipe_staging
Staging repository to build and upload conda packages before their submission to conda-forge and bioconda
hsun3163/xqtl-data
Molecular QTL data resource developed by ADSP Functional Genomics Consortium
hsun3163/xqtl-protocol
Molecular QTL data analysis pipeline developed for ADSP functional genomic consortium
hsun3163/xqtl-protocol-paper
This is the repo hosting the protocol analysis as demo of the xQTL-protocol paper