This repository contains the source code to perform the ensemble tractography and replicate key results from the following paper:
Ensemble tractography. by Takemura, H., Caiafa, C., Wandell, B. A. & Pestilli, F. PLoS Computational Bilogy, 12(2): e1004692. https://doi.org/10.1371/journal.pcbi.1004692
Required operating enviroment
Matlab 2012b or newer version of MATLAB. The code probably runs on earlier versions, but we have not checked extensively.
The code also requires three toolboxes you can download freely:
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vistasoft (Wandell Lab., Stanford) https://github.com/vistalab/vistasoft
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LiFE (Franco Pestilli, Indiana University; Cesar Caiafa, CONICET) https://github.com/francopestilli/life
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MBA (Franco Pestilli, Stanford) https://github.com/francopestilli/mba
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AFQ (Jason D. Yeatman, Stanford) https://github.com/jyeatman/AFQ
All of this software must be on your path.
The part of the code will have dependency on curve fitting toolbox for computing fascicle curvature.
If you use this software please cite the article above.
Copyright (c) Hiromasa Takemura, Stanford VISTA Team/CiNet, 2015