Pinned Repositories
1sadassf
3D_Unet_Vessel_segmentation
Part of research code
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
DeepCAC
Fully automatic coronary calcium risk assessment using Deep Learning.
Medical-Data-Visualization-3D
This is a medical data visualization program. This takes in some medical DICOM, MRI, CT data and produces 3D model. There are also other tools included such as image scroller, image segmentation, brain 3d model, bone 3d model visualizer.
pytorch-cnn-visualizations
Pytorch implementation of convolutional neural network visualization techniques
recurrent-unet-drive
VesselSeg
Lung vessel segmentation based on random
VesselSeg-1
DenseNet Parallel Branch Retina (DenseNetPBR) for concurrent segmentation and classification experiments.
VesselSegmentation
htt1994's Repositories
htt1994/awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
htt1994/awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going).
htt1994/cerebrovascular_analysis
htt1994/Code_and_Analysis_Tools
htt1994/COGS185-AutoContext
My implementation of the Auto Context algorithm
htt1994/COGS185-RandomForest
My implementation of the Random Forest algorithm, using ID3 decision trees
htt1994/ConvertVesselTreesToITKSpatialObjects
Convert Vessel Trees To ITK Spatial Objects
htt1994/Cross_Net
Containing codes for MPhil project of medical image classification and segmentation
htt1994/cross_validation
Cross validation tests
htt1994/Curviliniar_Detector
Detects blood vessels, roads, text, etc..
htt1994/DCNN-Image-Segmentation
Image Segmentation Methods Based on Deep Learning: Study and Implementation
htt1994/ETH-SegReg
Algorithms and methods for (medical) image registration and segmentation
htt1994/fcn.berkeleyvision.org
Fully Convolutional Networks for Semantic Segmentation by Jonathan Long*, Evan Shelhamer*, and Trevor Darrell. CVPR 2015 and PAMI 2016.
htt1994/fundus-vessel-segmentation
One of the first steps in automatic fundus image analysis is the segmentation of the retinal vasculature, which provides valuable information related to several diseases. In this work, we present an extensive description and evaluation of our method for blood vessel segmentation in fundus images based on a discriminatively trained, fully connected conditional random field model. This task remains a challenge largely due to the desired structures being thin and elongated, a setting that performs particularly poorly using standard segmentation priors, such as a Potts model or total variation. We overcome this difficulty by using a conditional random field model with more expressive potentials, taking advantage of recent results enabling inference of fully connected models almost in real-time. Parameters of the method are learned automatically using a structured output support vector machine, a supervised technique widely used for structured prediction in a number of machine learning applications. The evaluation of our method is performed both quantitatively and qualitatively on DRIVE, STARE, CHASEDB1 and HRF, showing its ability to deal with different types of images and outperforming other techniques, trained using state of the art features.
htt1994/gco_python
Python wrappers for GCO alpha-expansion and alpha-beta-swaps
htt1994/GPU-Marching-Cubes
A GPU implementation of the Marching Cubes algorithm for extracting surfaces from volumes using OpenCL and OpenGL
htt1994/ITKMinimalPathExtraction
http://www.insight-journal.org/browse/publication/213
htt1994/knn-matting
Source Code for KNN Matting, CVPR 2012 / TPAMI 2013
htt1994/learn-orientation
htt1994/livewire
Livewire algorithm for image segmentation
htt1994/LSMLIB
Level Set Method Library
htt1994/OpenCL-Getting-Started
A small "getting started" tutorial for OpenCL. See http://www.eriksmistad.no/getting-started-with-opencl-and-gpu-computing/ for more info
htt1994/PBO
htt1994/pysegbase
3D graph cut segmentation
htt1994/RORPO
Ranking Operator Response of Path Openings
htt1994/SimpleITK
SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.
htt1994/SIPL
The Simple Image Processing Library (SIPL) is a C++ library with the main goal of making it easy to go from an algorithm concept to pictures on the screen.
htt1994/vessel-tools
Automatically exported from code.google.com/p/vessel-tools
htt1994/Vessel3DDL
Automated Multiscale 3D Feature Learning for Vessels Segmentation in Thorax CT Images
htt1994/VesselView
VesselView is a demonstration application from Kitware Inc for the segmentation, registration and analysis of tubes( e.g, blood vessels) in 3D images (e.g, MRI, CT and Ultrasound).