huBioinfo
Conducting research in computational systems biology, network medicine and machine learning. Contact: huyuxuan@xidian.edu.cn
Xidian University
Pinned Repositories
ann-benchmarks
Benchmarks of approximate nearest neighbor libraries in Python
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
CytoCommunity-Beta_v1.1.0
CytoCommunity_Tutorials
CytoTalk
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
CytoTalk_Pro
diffpool
kgraph
A library for k-nearest neighbor search
OptiCon
A general framework for systematic and de novo identification of synergistic key regulators.
huBioinfo's Repositories
huBioinfo/CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
huBioinfo/CytoTalk
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
huBioinfo/OptiCon
A general framework for systematic and de novo identification of synergistic key regulators.
huBioinfo/ann-benchmarks
Benchmarks of approximate nearest neighbor libraries in Python
huBioinfo/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
huBioinfo/CytoCommunity-Beta_v1.1.0
huBioinfo/CytoCommunity_Tutorials
huBioinfo/CytoTalk_Pro
huBioinfo/diffpool
huBioinfo/kgraph
A library for k-nearest neighbor search
huBioinfo/Ligand-Receptor-Pairs
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
huBioinfo/pytorch_geometric
Geometric Deep Learning Extension Library for PyTorch
huBioinfo/seurat
R toolkit for single cell genomics
huBioinfo/snap
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
huBioinfo/SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
huBioinfo/VisCello
Viscello for Visualization of Single Cell Data
huBioinfo/WEAVESS
A Comprehensive Survey and Experimental Comparison of Graph-based Approximate Nearest Neighbor Search