huangguanlan

huangguanlan's Stars

• nikhilbarhate99/PPO-PyTorch

  Minimal implementation of clipped objective Proximal Policy Optimization (PPO) in PyTorch

  Language:Python1.6k341

• hyunwoongko/transformer

  Transformer: PyTorch Implementation of "Attention Is All You Need"

  Language:Python2.8k412

• atgambardella/pytorch-es

  Evolution Strategies in PyTorch

  Language:Python34741

• openai/evolution-strategies-starter

  Code for the paper "Evolution Strategies as a Scalable Alternative to Reinforcement Learning"

  Language:Python1.6k276

• hardmaru/estool

  Evolution Strategies Tool

  Language:Jupyter Notebook928163

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook14.5k1.3k

• bmd2007/benchmark_eval

  Language:Python143

• samsledje/D-SCRIPT

  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

  Language:Jupyter Notebook8317

• muhaochen/seq_ppi

  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN".

  Language:Python8425

• oxpig/AbLang

  AbLang: A language model for antibodies

  Language:Python11723

• kalininalab/alphafold_non_docker

  AlphaFold2 non-docker setup

  Language:Shell337119

• lucidrains/alphafold2

  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

  Language:Python1.5k254

• HeliXonProtein/proximal-exploration

  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"

  Language:Python3512

• JocelynSong/IsEM-Pro

  Language:Python6

• dauparas/ProteinMPNN

  Code for the ProteinMPNN paper

  Language:Jupyter Notebook937284

• dptech-corp/Uni-Fold

  An open-source platform for developing protein models beyond AlphaFold.

  Language:Python36769

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python12.5k1.1k

• salesforce/progen

  Official release of the ProGen models

  Language:Python604111

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook925111

• Dao-AILab/flash-attention

  Fast and memory-efficient exact attention

  Language:Python13.4k1.2k

• dome272/Diffusion-Models-pytorch

  Pytorch implementation of Diffusion Models (https://arxiv.org/pdf/2006.11239.pdf)

  Language:Python1.1k255

• LuShanYanYu7/Improved-Text-Classification-via-Contrastive-Adversarial-Training

  试图复现paper:Improved Text Classification via Contrastive Adversarial Training

  Language:Python5

• deep-spin/entmax

  The entmax mapping and its loss, a family of sparse softmax alternatives.

  Language:Python40643

• FreedomIntelligence/complex-order

  Language:Python8313

• microsoft/LoRA

  Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

  Language:Python10.3k659

• timbmg/Sentence-VAE

  PyTorch Re-Implementation of "Generating Sentences from a Continuous Space" by Bowman et al 2015 https://arxiv.org/abs/1511.06349

  Language:Python584151

• HazyResearch/hyena-dna

  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

  Language:Assembly56583

• jszym/StatSEG

  Low-complexity amino/nucleic acid masking

  Language:Python2

• Liuzhe30/TMP-SSurface-2.0

  A Deep Learning-Based Predictor for Surface Accessibility of Transmembrane Protein Residues

  Language:Python54

• Noppawat-Tantisiriwat/basic-protein-hydropathy-plot

  ทำลองสร้าง protein hydropathy plot จาก numpy และ matplotlib อย่างง่ายเพื่อใช้ในการเรียนรู้ด้าน bioinformatics

  Language:Jupyter Notebook1