Dendrimer Builder Toolkit (DBT) with maximum of 8 multiplicity
The original script was downloaded from http://www.physics.iisc.ernet.in/~maiti/dbt/home.html
If you use this script in your publication, please cite their original paper: http://onlinelibrary.wiley.com/doi/10.1002/jcc.23031/abstract
In our study, "poss_lys.lib" and "dpi_lys.lib" are the amber library files for the creation of POSS-PLL and PDI-PLL dendrimers respectively. If you use the "poss_lys.lib" and "dpi_lys.lib", please cite our paper (https://pubs.acs.org/doi/10.1021/acs.jpcb.2c08983).
A brief tutorial for building G3 POSS-PLL dendrimer using tleap of Ambertools is as follows.
source leaprc.gaff
loadoff poss_lys.lib
loadamberparams aaa.frcmod
loadamberparams bbb.frcmod
loadamberparams ccc.frcmod
den=loadpdb L3.pdb
bondByDistance den 1.558
saveamberparm den L3.prmtop L3.inpcrd
check den
quit