huangkai0518

huangkai0518's Stars

• mgoeker/table2itol

  Generating iToL annotations from Spreadsheet or CSV files

  Language:R9640

• Angey40/BaiduPCS-Go

  百度网盘工具箱 - Go语言编写

  Language:Go3723.6k

• ShawnWx2019/MetMiner

  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis

  Language:R161

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R38256

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python701188

• velocyto-team/velocyto.R

  RNA velocity estimation in R

  Language:R179223

• mycecilia/FaST-LMM

  Python version of Factored Spectrally Transformed Linear Mixed Models

  Language:Python246

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k987

• tseemann/barrnap

  :microscope: :leo: Bacterial ribosomal RNA predictor

  Language:Perl22440

• python-openxml/python-docx

  Create and modify Word documents with Python

  Language:Python4.6k1.1k

• HaojiaWu/plot1cell

  A R package for advanced single cell data viz

  Language:R5826

• liulab-dfci/TRUST4

  TCR and BCR assembly from RNA-seq data

  Language:C27849

• YinLiLin/CMplot

  📊 Circular and Rectangular Manhattan Plot

  Language:R527114

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R483117

• Nanostring-Biostats/SpatialDecon

  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)

  Language:R337

• excalidraw/excalidraw

  Virtual whiteboard for sketching hand-drawn like diagrams

  Language:TypeScript84.1k7.9k

• OSGeo/gdal

  GDAL is an open source MIT licensed translator library for raster and vector geospatial data formats.

  Language:C++4.9k2.5k

• zhengli09/BASS

  Bayesian Analytics for Spatial Segmentation

  Language:C++217

• YMa-lab/CARD

  Language:R9921

• scverse/squidpy

  Spatial Single Cell Analysis in Python

  Language:Python43979

• edward130603/BayesSpace

  Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.

  Language:R10722

• jianhuupenn/SpaGCN

  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

  Language:Python19859

• tbenavi1/genomescope2.0

  Reference-free profiling of polyploid genomes

  Language:R10218

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k167

• jinworks/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

  Language:R28649

• aertslab/SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

  Language:HTML41694

• edsgard/trendsceek

  Identify genes with spatial expression trends in single-cell gene expression data

  Language:HTML4817

• STOmics/SAW

  Language:HTML14134

• shorvath/MammalianMethylationConsortium

  DNA methylation studies of mammalian species

  Language:R3211

• yiluyucheng/dnaMethyAge

  Predict epigenetic age from DNA methylation data

  Language:R3911