Pinned Repositories
20191109_AKI_python
Atlas_Match_Tool
Atlas_Match_Tool_by_Zhi
biolearns
BioLearns: Computational Biology and Bioinformatics Toolbox in Python
FCN-3D-pytorch
A 3D Fully Convolutional Nets implementation in pytorch
IMPRESS
lmQCM
R package lmQCM: An Algorithm for Gene Co-Expression Analysis
nuclei.io
nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
SALMON
SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
TSUNAMI
An R software for Gene Co-Expression Analysis
plip
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
huangzhii's Repositories
huangzhii/SALMON
SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
huangzhii/nuclei.io
nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
huangzhii/biolearns
BioLearns: Computational Biology and Bioinformatics Toolbox in Python
huangzhii/IMPRESS
huangzhii/TSUNAMI
An R software for Gene Co-Expression Analysis
huangzhii/lmQCM
R package lmQCM: An Algorithm for Gene Co-Expression Analysis
huangzhii/AmIGrinding
huangzhii/AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
huangzhii/chatbot-ui
A ChatGPT clone for running locally in your browser.
huangzhii/CoxNMF
huangzhii/DeepAttnMISL
Contains codes of DeepAttnMISL in MEDIA'20
huangzhii/GCML
Code for WACV 2022 paper "Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation"
huangzhii/HistomicsTK
A Python toolkit for pathology image analysis algorithms.
huangzhii/Image2Paragraph
Transform Image into Unique Paragraph with ChatGPT, BLIP2, OFA, GRIT, Segment Anything, ControlNet.
huangzhii/IMPRESS-NAC
Huang et al. Artificial Intelligence Predicts Breast Cancer Neoadjuvant Chemotherapy Response from Multi-source Pathologic Images
huangzhii/isyntax2raw
iSyntax to raw format converter
huangzhii/LAVIS
LAVIS - A One-stop Library for Language-Vision Intelligence
huangzhii/MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
huangzhii/MedMNIST
MedMNIST Classification Decathlon: A Lightweight AutoML Benchmark for Medical Image Analysis
huangzhii/Mixed_supervision
MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.
huangzhii/nuclei-HAI
huangzhii/nuclei.io_study_training_scripts
huangzhii/PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
huangzhii/pubmed_parser
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
huangzhii/PyContrast
PyTorch implementation of Contrastive Learning methods; List of awesome-contrastive-learning papers
huangzhii/RAD
huangzhii/self-driving-car
Udacity Self-Driving Car Engineer Nanodegree projects.
huangzhii/slidescape
huangzhii/TDC
Therapeutics Data Commons: Machine Learning Datasets for Therapeutics
huangzhii/TSUNAMI_Gateway