Pinned Repositories
AIDE
AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data
amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
AStrap
AStrap: Identification of alternative splicing from transcript sequences without a reference genome
ATAC-seq
Basic workflow for ATAC-seq analysis
blast
ncbi-blast-2.7.1
bowtie2
A fast and sensitive gapped read aligner
BubbZ
canu
A single molecule sequence assembler for genomes large and small.
CirGO
CONFOLD2
Improved ab initio protein structure reconstruction
huangziyan11111's Repositories
huangziyan11111/ATAC-seq
Basic workflow for ATAC-seq analysis
huangziyan11111/blast
ncbi-blast-2.7.1
huangziyan11111/bowtie2
A fast and sensitive gapped read aligner
huangziyan11111/BubbZ
huangziyan11111/canu
A single molecule sequence assembler for genomes large and small.
huangziyan11111/CirGO
huangziyan11111/DeepVirFinder
Identifying viruses from metagenomic data by deep learning
huangziyan11111/dgenies
Dotplot large Genomes in an Interactive, Efficient and Simple way
huangziyan11111/ensembleCNV
huangziyan11111/EVidenceModeler
source code for EVM
huangziyan11111/flair
Full-Length Alternative Isoform analysis of RNA
huangziyan11111/googletest
Googletest - Google Testing and Mocking Framework
huangziyan11111/HMMRATAC
HMMRATAC peak caller for ATAC-seq data
huangziyan11111/iCNV
Integrated copy number variation detection toolset
huangziyan11111/install_aspera_connect
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
huangziyan11111/javascript
JavaScript Style Guide
huangziyan11111/LTR_FINDER_parallel
A parallel wrapper for LTR_FINDER
huangziyan11111/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
huangziyan11111/MACS
MACS -- Model-based Analysis of ChIP-Seq
huangziyan11111/mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus.
huangziyan11111/Mosaic
MOSAIC
huangziyan11111/NINJA
Nearly Infinite Neighbor Joining Application
huangziyan11111/ntJoin
đź”—Genome assembly scaffolder using minimizer graphs
huangziyan11111/povray
The Persistence of Vision Raytracer: http://www.povray.org/
huangziyan11111/pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
huangziyan11111/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
huangziyan11111/RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
huangziyan11111/reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
huangziyan11111/spoa
SIMD partial order alignment tool/library
huangziyan11111/STAR
RNA-seq aligner