hubmapconsortium/ontology-api

Issues

• Feature: tree based faceted search for anatomy

  #136 opened 2 years ago by JAH386
  3

• Develop cypher for variable length CUI-CUI API

  #108 opened 2 years ago by computationdoc
  1

• Cypher injection API

  #106 opened 3 years ago by computationdoc
  2

• Address risk of ingesting TTY NA as NaN in Pandas code

  #109 opened 3 years ago by computationdoc
  2

• AVR Request Table: Fix Typo on Tutorial page

  #176 opened 2 years ago by ChuckKollar
  1

• use KG to create data for anatomy faceted search tree for portal

  #134 opened 3 years ago by computationdoc
  2

• Review and suggest changes to APIs deployed

  #107 opened 2 years ago by computationdoc
  1

• Add VARIO to KG

  #102 opened 2 years ago by computationdoc
  1

• Add HCA ontology to KG

  #110 opened 2 years ago by computationdoc
  1

• Add ORDO to KG

  #103 opened 2 years ago by computationdoc
  1

• Add CCO to KG

  #104 opened 2 years ago by computationdoc
  1

• Add HubMap Organ Ontology in a general way

  #105 opened 2 years ago by computationdoc
  1

• Update to CCF 2.0

  #135 opened 2 years ago by bherr2
  1

• Ontology: Orchestration of UMLS CSV exports for ontology neo4j

  #148 opened 2 years ago by AlanSimmons
  7

• Ontology: Automate Knowledge Graph Release

  #152 opened 2 years ago by AlanSimmons
  0

• Ontology: Add GraSS file to neo4j.conf for ontology neo4j browser configuration

  #160 opened 2 years ago by AlanSimmons
  0

• Ontology: Add ASCT+B vsn 2.0.1

  #153 opened 2 years ago by shirey
  1

• Bug fix: HuBMAP ontology dbxrefs to EDAM concepts

  #177 opened 2 years ago by AlanSimmons
  0

• UBKG REST API (HM & DD) through AWS API Gateway

  #179 opened 2 years ago by yuanzhou
  2

• ontology-api: update neo4j and API

  #178 opened 2 years ago by AlanSimmons
  3

• EPIC - Ontology: build API endpoints for valuesets used by CEDAR metadata templates

  #175 opened 2 years ago by AlanSimmons
  9

• Ontology: Test Ontology Neo4j on DEV built using CSVs built using Alan's script

  #147 opened 2 years ago by ChuckKollar
  5

• Load latest working version of Ontology onto PROD

  #154 opened 2 years ago by shirey
  7

• Rebuild ontology neo4j with latest CSVs

  #174 opened 2 years ago by yuanzhou
  0

• Added /status endpoint

  #169 opened 2 years ago by ChuckKollar
  0

• Ontology: Rename OWLNETS-UMLS-GRAPH-12.py to reflect source of truth version of code

  #164 opened 2 years ago by AlanSimmons
  3

• Ontology: Add Python logging to OWLNETS-UMLS CSV conversion script

  #165 opened 2 years ago by AlanSimmons
  2

• Ontology: obtain relationship information for edge IRIs that are not in Relations Ontology

  #167 opened 2 years ago by AlanSimmons
  2

• Ontology: add basic QA statements related to ontology ingestion

  #168 opened 2 years ago by AlanSimmons
  2

• Ontology: remove SUIs

  #170 opened 2 years ago by AlanSimmons
  2

• Ontology/Data Distillery: Migrate repo to dbmi-Pitt github organization

  #166 opened 2 years ago by AlanSimmons
  4

• Ontology: integrate Mondo ontology

  #162 opened 2 years ago by AlanSimmons
  2

• Ontology: when integrating EDAM, force use of EDAM as SAB

  #163 opened 2 years ago by AlanSimmons
  1

• Ontology: upgrade UMLS CSVs to use exports from Neptune for 2022AB

  #172 opened 2 years ago by AlanSimmons
  1

• Ontology: Remove dependency on OWLNETS_relations.txt

  #161 opened 2 years ago by AlanSimmons
  3

• Spin up an Ontology Neo4j container on DEV using CSVs from a build using Alan's script

  #146 opened 2 years ago by ChuckKollar
  4

• Integrate Ontology for assay_types into Ne04j db

  #113 opened 2 years ago by ChuckKollar
  2

• Build new CSV files using Alan's script

  #145 opened 2 years ago by ChuckKollar
  4

• Import assay categorization into ontology

  #137 opened 2 years ago by JAH386
  1

• Firedrill for KidsFirst

  #142 opened 2 years ago by ChuckKollar
  0

• Secure and release PROD ontology-api

  #133 opened 2 years ago by shirey
  0

• ontology api open api spec cosmetics

  #139 opened 3 years ago by computationdoc
  0

• Change one character in the cypher for concepts/{id}/concepts to properly limit to "back relations" not "both relations"

  #138 opened 3 years ago by computationdoc
  0

• Update ontology-api-spec.yaml

  #121 opened 3 years ago by ChuckKollar
  2

• Release versioning

  #114 opened 3 years ago by shirey
  1

• Log4J CVE Mitigation for Ontology-Neo4j

  #126 opened 3 years ago by yuanzhou
  1

• Confirm end-to-end/turnkey ETL for Ontology DB

  #111 opened 3 years ago by shirey
  0

• Test load various Ontologies:

  #122 opened 3 years ago by shirey
  0

• Mine HuBMAP term_ids from the HuBMAP Ontology Database

  #119 opened 3 years ago by ChuckKollar
  0

• Release ontology-api to PROD

  #112 opened 3 years ago by shirey
  0