Install command line tools (includes git) with:
xcode-select --install
Do all the following with:
source setup.sh
Link dotfiles with:
ruby dotfiles/symlink.rb
Install Homebrew with:
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
Install all packages in Brewfile with:
brew update
brew tap Homebrew/bundle
brew bundle
Includes Ruby and Python package managers (gem and pip).
ln -f -s /usr/local/bin/raxmlHPC-PTHREADS-AVX /usr/local/bin/raxml
Setup Ruby environment, including bundler and contents of Gemfile:
rbenv install 2.1.1
rbenv global 2.1.1
gem install bundler
bundle install
rbenv rehash
Install contents of requirements.txt:
pip install --egg -r requirements.txt
Set OS X defaults with:
source defaults/osx.sh