MicrobiomeProfiler is an R-shiny package based on clusterProfiler,
is user-friendly tool for functional enrichment analysis in microbiome
data (T Wu, et al., 2021).
Installation via BiocManager:
if (!require("BiocManager"))
install.packages("BiocManager")
BiocManager::install("MicrobiomeProfiler")
Or install MicrobiomeProfiler from github using devtools :
## Note that having installed clusterProfiler,config,DT,enrichplot,golem,magrittr,shiny,shinyWidgets,shinycustomloader,htmltools,ggplot2
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("YuLab-SMU/MicrobiomeProfiler")
library(MicrobiomeProfiler)
run_MicrobiomeProfiler()
- T Wu#, E Hu#, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo*, G Yu*. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. The Innovation. 2021, 2(3):100141. doi: 10.1016/j.xinn.2021.100141